View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_low_46 (Length: 220)

Name: NF21648_low_46
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21648_low_46
NF21648_low_46
[»] chr8 (12 HSPs)
chr8 (15-205)||(192193-192383)
chr8 (15-205)||(719797-719987)
chr8 (15-205)||(880904-881094)
chr8 (15-167)||(192125-192274)
chr8 (15-167)||(719729-719878)
chr8 (15-167)||(880836-880985)
chr8 (77-167)||(192119-192206)
chr8 (77-167)||(719723-719810)
chr8 (77-167)||(880830-880917)
chr8 (87-168)||(192106-192187)
chr8 (87-168)||(719710-719791)
chr8 (87-168)||(880817-880898)
[»] chr3 (4 HSPs)
chr3 (15-205)||(51126470-51126660)
chr3 (15-167)||(51126579-51126728)
chr3 (77-167)||(51126647-51126734)
chr3 (87-168)||(51126666-51126747)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 192193 - 192383
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  192193 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 192292  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192293 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 192383  T

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Target: chr8; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 719797 - 719987
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  719797 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 719896  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719897 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 719987  T

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Target: chr8; HSP #3
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 205
Target Start/End: Original strand, 880904 - 881094
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  880904 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 881003  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  881004 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 881094  T

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Target: chr8; HSP #4
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 192125 - 192274
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  192125 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 192224  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  192225 tgttataattctttacataattctgctata---ctgtacataattctgctata 192274  T

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Target: chr8; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 719729 - 719878
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  719729 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 719828  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  719829 tgttataattctttacataattctgctata---ctgtacataattctgctata 719878  T

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Target: chr8; HSP #6
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 167
Target Start/End: Original strand, 880836 - 880985
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  880836 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 880935  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  880936 tgttataattctttacataattctgctata---ctgtacataattctgctata 880985  T

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Target: chr8; HSP #7
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 192119 - 192206
Alignment:
Q  77 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  192119 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 192206  T

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Target: chr8; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 719723 - 719810
Alignment:
Q  77 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  719723 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 719810  T

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Target: chr8; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 167
Target Start/End: Original strand, 880830 - 880917
Alignment:
Q  77 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  880830 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 880917  T

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Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 192106 - 192187
Alignment:
Q  87 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 168  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  192106 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 192187  T

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Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 719710 - 719791
Alignment:
Q  87 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 168  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  719710 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 719791  T

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Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 880817 - 880898
Alignment:
Q  87 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 168  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  880817 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 880898  T

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Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 15 - 205
Target Start/End: Complemental strand, 51126660 - 51126470
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||| |||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126660 ataattctgctatagttttctgtacataattctgttataattctttacataattctgctatactgtacataattctgctatagttttctgtacataattc 51126561  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126560 tgttataattctgtacatcattctgctataattctttacataattctgctatacataattctgccatatacatatcataattctgccatgt 51126470  T

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Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 15 - 167
Target Start/End: Complemental strand, 51126728 - 51126579
Alignment:
Q  15 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51126728 ataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatactgtacataattctgctatagttttctgtacataattc 51126629  T
Q  115 tgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    |||||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  51126628 tgttataattctttacataattctgctata---ctgtacataattctgctata 51126579  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 77 - 167
Target Start/End: Complemental strand, 51126734 - 51126647
Alignment:
Q  77 ctgtacataattctgctatagttttctgtacataattctgttataattctgtacatcattctgctataattctttacataattctgctata 167  Q
    ||||||||||||||||||||||||| |||||||| ||||| ||||||||| ||||| |||||||||||   || |||||||||||||||||    
T  51126734 ctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctata---ctgtacataattctgctata 51126647  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 168
Target Start/End: Complemental strand, 51126747 - 51126666
Alignment:
Q  87 ttctgctatagttttctgtacataattctgttataattct--gtacatcattctgctataattctttacataattctgctatac 168  Q
    ||||||||||  |||||||||||||||||| |||| || |  ||||||  ||||||||||||||||||||| ||||||||||||    
T  51126747 ttctgctata--tttctgtacataattctgctatagttttttgtacatagttctgctataattctttacatgattctgctatac 51126666  T

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