View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_low_5 (Length: 584)

Name: NF21648_low_5
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21648_low_5
NF21648_low_5
[»] chr7 (7 HSPs)
chr7 (143-317)||(17914326-17914500)
chr7 (397-574)||(17914580-17914747)
chr7 (11-74)||(17914196-17914259)
chr7 (145-256)||(4587680-4587793)
chr7 (194-246)||(18046281-18046333)
chr7 (207-240)||(12468750-12468783)
chr7 (17-69)||(17909279-17909331)
[»] chr2 (7 HSPs)
chr2 (145-274)||(25473213-25473345)
chr2 (397-538)||(25473464-25473595)
chr2 (191-256)||(19011872-19011937)
chr2 (147-215)||(20910493-20910562)
chr2 (18-75)||(9619177-9619234)
chr2 (145-224)||(31483239-31483320)
chr2 (145-231)||(35406085-35406173)
[»] chr4 (7 HSPs)
chr4 (144-274)||(5628026-5628157)
chr4 (481-538)||(49300181-49300238)
chr4 (152-256)||(24332741-24332847)
chr4 (149-232)||(16711228-16711312)
chr4 (201-256)||(6244154-6244209)
chr4 (201-247)||(6337819-6337865)
chr4 (191-255)||(10398660-10398724)
[»] chr8 (5 HSPs)
chr8 (145-225)||(11647572-11647653)
chr8 (145-238)||(33053638-33053733)
chr8 (145-245)||(19709723-19709824)
chr8 (147-232)||(19467486-19467573)
chr8 (147-232)||(19565167-19565254)
[»] chr6 (4 HSPs)
chr6 (145-246)||(3634199-3634302)
chr6 (191-256)||(22259446-22259511)
chr6 (201-245)||(16142377-16142421)
chr6 (191-256)||(6038778-6038843)
[»] chr3 (4 HSPs)
chr3 (145-238)||(1085484-1085572)
chr3 (194-238)||(14132335-14132379)
chr3 (196-243)||(5495370-5495417)
chr3 (144-172)||(14132403-14132431)
[»] chr5 (4 HSPs)
chr5 (191-256)||(21166407-21166472)
chr5 (185-256)||(21171028-21171096)
chr5 (208-245)||(31533262-31533299)
chr5 (194-238)||(24878181-24878225)
[»] chr1 (2 HSPs)
chr1 (145-240)||(28623184-28623281)
chr1 (194-238)||(17615084-17615128)
[»] scaffold0167 (1 HSPs)
scaffold0167 (201-256)||(733-788)


Alignment Details
Target: chr7 (Bit Score: 147; Significance: 3e-77; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 143 - 317
Target Start/End: Original strand, 17914326 - 17914500
Alignment:
Q  143 catgtttaccggtgtttttggtaaacaagacactaattttaagagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcag 242  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  17914326 catgtttaccggtgtttttggtaaacaagacactaattttaaaagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgtttttccag 17914425  T
Q  243 aaaaggtttgaatgcccatcatgctcttaagaataaacgcggagaatatgaaggtcaatgtctaattcgaccgaa 317  Q
    |||||||||||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||||| ||||    
T  17914426 aaaaggtttgaatgcccatcatgctcttaagaataaacacgaagaagatgaagatcaatgtctaattcgatcgaa 17914500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 397 - 574
Target Start/End: Original strand, 17914580 - 17914747
Alignment:
Q  397 ttcgaattgcattaagtaaatttgttcatcaaataagttacatacattcttgttactttttnnnnnnnnnnnnnnnnnnngtgtttggataattcgagcg 496  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||                   ||||||||||||||||||||    
T  17914580 ttcgaattgcattaagtaaattttttcatcaaataagttatatacattcttgttacttttttctctctct----------gtgtttggataattcgagcg 17914669  T
Q  497 taagaacttttgtttatgatttgtgactcatatttcctatgacatacttgacttttttccacgtgtcatgaacctttg 574  Q
    ||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  17914670 taagaacttttatttatgatttgtgacccatatttcctatgacatacttgacttgtttccacgtgtcatgaacctttg 17914747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 17914196 - 17914259
Alignment:
Q  11 acatcatcattttagaccgaaaatgcatacatactcatttccatgaagcgaggttatatggtgg 74  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17914196 acataatcattttagaccgaaaatgcatacatactcatttccatgaagcgaggttatatggtgg 17914259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 256
Target Start/End: Original strand, 4587680 - 4587793
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagac-actaattttaaga-gtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcag 242  Q
    |||||||||||||||||||||||||| |  |||| |||| | | ||| |||||| ||  |||||||||||| ||| ||||||| ||| || |||||||||    
T  4587680 tgtttaccggtgtttttggtaaacaatatgactagtttttaaacgttgcttgcaagattaaactagaaatcgtagcacatgttgtgcgatcttttttcag 4587779  T
Q  243 aaaaggtttgaatg 256  Q
    |||| |||||||||    
T  4587780 aaaatgtttgaatg 4587793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 246
Target Start/End: Original strand, 18046281 - 18046333
Alignment:
Q  194 gcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaa 246  Q
    |||||| |||||||||||| |||||||||||| ||||| |||||| |||||||    
T  18046281 gcaggatcaaactagaaatactaggacatgttgtgcaaagtttttccagaaaa 18046333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 240
Target Start/End: Original strand, 12468750 - 12468783
Alignment:
Q  207 agaaatcctaggacatgttatgcaatgttttttc 240  Q
    |||||||||||||||||||||||||| |||||||    
T  12468750 agaaatcctaggacatgttatgcaatcttttttc 12468783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 17909331 - 17909279
Alignment:
Q  17 tcattttagaccgaaaatgcatacatactcatttccatgaagcgaggttatat 69  Q
    |||||||||||| | |||||||||||| |||||||||| |||  |||||||||    
T  17909331 tcattttagaccaacaatgcatacatattcatttccataaagtaaggttatat 17909279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 3e-31; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 145 - 274
Target Start/End: Original strand, 25473213 - 25473345
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagacactaattttaaga-gtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatg--ttttttca 241  Q
    |||| |||||||||||||||||||||||||||| |||||| | ||| |||||| || ||||||||||||||||||||||||| |||||||  ||||||||    
T  25473213 tgttaaccggtgtttttggtaaacaagacactagttttaaaatgttacttgcatgatcaaactagaaatcctaggacatgttgtgcaatgttttttttca 25473312  T
Q  242 gaaaaggtttgaatgcccatcatgctcttaaga 274  Q
    ||||| |||||||||  ||||||| ||||||||    
T  25473313 gaaaatgtttgaatgttcatcatgttcttaaga 25473345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 397 - 538
Target Start/End: Original strand, 25473464 - 25473595
Alignment:
Q  397 ttcgaattgcattaagtaaatttgttcatcaaataagttacatacattcttgttactttttnnnnnnnnnnnnnnnnnnngtgtttggataattcgagcg 496  Q
    |||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | |||                   ||| |||||||||||||| |    
T  25473464 ttcgaattgcattacgtaaatttgttcatcaaatcagttacatacattcttgttagtcttt----------tctctatgtgtgattggataattcgagtg 25473553  T
Q  497 taagaacttttgtttatgatttgtgactcatatttcctatga 538  Q
    ||||||||||||| ||||||||||||| ||||||||||||||    
T  25473554 taagaacttttgtatatgatttgtgacccatatttcctatga 25473595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 19011872 - 19011937
Alignment:
Q  191 cttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaatg 256  Q
    ||||||||| |||| ||||||||||||||||| || |||||| ||||| ||||||  |||||||||    
T  19011872 cttgcaggatcaaattagaaatcctaggacatattgtgcaatatttttccagaaattgtttgaatg 19011937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 20910562 - 20910493
Alignment:
Q  147 tttaccggtgtttttggtaaacaagaca-ctaattttaagagtttcttgcaggaccaaactagaaatcct 215  Q
    |||| ||||||||||||||||||| | | ||||||||||||||| ||| ||||| |||||||| ||||||    
T  20910562 tttatcggtgtttttggtaaacaaaaaagctaattttaagagttgcttacaggatcaaactagtaatcct 20910493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 75
Target Start/End: Original strand, 9619177 - 9619234
Alignment:
Q  18 cattttagaccgaaaatgcatacatactcatttccatgaagcgaggttatatggtggg 75  Q
    ||||||| ||| | |||| ||||||||||||||||||||||  || ||||||||||||    
T  9619177 cattttaaaccaacaatgtatacatactcatttccatgaagtaagattatatggtggg 9619234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 224
Target Start/End: Original strand, 31483239 - 31483320
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagac-actaatttt-aagagtttcttgcaggaccaaactagaaatcctaggacatgt 224  Q
    ||||| ||||| ||||||||||||||||  |||| |||| || |||| |||||| || |||||||||||||||| |||||||    
T  31483239 tgtttgccggtatttttggtaaacaagaagactagtttttaaaagttgcttgcatgatcaaactagaaatcctatgacatgt 31483320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 145 - 231
Target Start/End: Complemental strand, 35406173 - 35406085
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaa-gacactaattttaaga-gtttcttgcaggaccaaactagaaatcctaggacatgttatgcaa 231  Q
    ||||||||||| ||||||||||||||  | |||| |||||| | ||| ||||||||| || | |||||||| ||||||||||| |||||    
T  35406173 tgtttaccggtttttttggtaaacaataagactagttttaaaacgttgcttgcaggatcagaatagaaatcgtaggacatgttgtgcaa 35406085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 9e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 144 - 274
Target Start/End: Complemental strand, 5628157 - 5628026
Alignment:
Q  144 atgtttaccggtgtttttggtaaacaagacactaattttaaga-gtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttc-a 241  Q
    |||||||||||||||||||||||||||||| |||||||||| |  || ||||||||| ||||||| ||||  ||||| ||||| |||||| | ||||| |    
T  5628157 atgtttaccggtgtttttggtaaacaagacgctaattttaaaatattacttgcaggatcaaactaaaaattttaggatatgtt-tgcaatatattttcta 5628059  T
Q  242 gaaaaggtttgaatgcccatcatgctcttaaga 274  Q
    ||||| |||||||||  ||||||| ||||||||    
T  5628058 gaaaatgtttgaatgttcatcatgttcttaaga 5628026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 481 - 538
Target Start/End: Complemental strand, 49300238 - 49300181
Alignment:
Q  481 ttggataattcgagcgtaagaacttttgtttatgatttgtgactcatatttcctatga 538  Q
    ||||||||||||||||||||||||||||||||| |||||||||   ||||||||||||    
T  49300238 ttggataattcgagcgtaagaacttttgtttataatttgtgacctctatttcctatga 49300181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 152 - 256
Target Start/End: Complemental strand, 24332847 - 24332741
Alignment:
Q  152 cggtgtttttggtaaacaagacactaa-ttttaagagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaag-gt 249  Q
    |||||||||||||||||||||   | | |||||| |||| ||||||  | ||||||||||||  || |||||||| ||||||||||||| ||||||| ||    
T  24332847 cggtgtttttggtaaacaagaatgttagttttaaaagttacttgcataatcaaactagaaattttatgacatgttgtgcaatgtttttttagaaaagtgt 24332748  T
Q  250 ttgaatg 256  Q
    |||||||    
T  24332747 ttgaatg 24332741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 149 - 232
Target Start/End: Original strand, 16711228 - 16711312
Alignment:
Q  149 taccggtgtttttggtaaacaagaca-ctaattttaagagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaat 232  Q
    |||||||||||||||| |||||||   ||| ||||||||||| |||| |||| |||||||| |||  ||||||||||| ||||||    
T  16711228 taccggtgtttttggtgaacaagaatgctagttttaagagttgcttgtaggatcaaactagcaattataggacatgttgtgcaat 16711312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 6244209 - 6244154
Alignment:
Q  201 caaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaatg 256  Q
    |||||||||||||||| | |||||| |||||| ||||| ||||||| |||||||||    
T  6244209 caaactagaaatcctatgccatgttgtgcaatctttttccagaaaatgtttgaatg 6244154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 247
Target Start/End: Original strand, 6337819 - 6337865
Alignment:
Q  201 caaactagaaatcctaggacatgttatgcaatgttttttcagaaaag 247  Q
    ||||| ||||||| ||||||||||| ||||| |||||||||||||||    
T  6337819 caaaccagaaatcttaggacatgttgtgcaaagttttttcagaaaag 6337865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 191 - 255
Target Start/End: Original strand, 10398660 - 10398724
Alignment:
Q  191 cttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaat 255  Q
    ||||||||| ||||||||||| |||||||||| || |||||   ||||||| |||| ||||||||    
T  10398660 cttgcaggatcaaactagaaaccctaggacatattgtgcaaatgtttttcaaaaaatgtttgaat 10398724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 6e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 11647653 - 11647572
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagac-actaattttaagagtttcttgcaggaccaaactagaaatcctaggacatgtt 225  Q
    |||||||||||||| |||||||||||||  |||||| |||| |||| |||||| || |||||||||||||||||||||||||    
T  11647653 tgtttaccggtgttcttggtaaacaagaagactaatcttaaaagttgcttgcatgatcaaactagaaatcctaggacatgtt 11647572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 33053638 - 33053733
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagac-actaattttaaga-gtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttt 238  Q
    |||||||||||||||||||||||||| |  |||| ||||||   ||| ||||||||| |||||||||||||||||| |||||| ||||||| ||||    
T  33053638 tgtttaccggtgtttttggtaaacaataagactagttttaaattgttacttgcaggatcaaactagaaatcctagggcatgttttgcaatgatttt 33053733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 245
Target Start/End: Complemental strand, 19709824 - 19709723
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagacac-taattttaagagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcaga 243  Q
    ||||||||||||||||||||||||||||  | ||||||| |   || |  |||||| ||||| | ||||||||||||||||| |||||| ||||||||||    
T  19709824 tgtttaccggtgtttttggtaaacaagaagcctaattttgattattgcaagcaggatcaaaccataaatcctaggacatgttgtgcaatcttttttcaga 19709725  T
Q  244 aa 245  Q
    ||    
T  19709724 aa 19709723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 19467486 - 19467573
Alignment:
Q  147 tttaccggtgtttttggtaaacaagacactaattttaag--agtttcttgcaggaccaaactagaaatcctaggacatgttatgcaat 232  Q
    |||||||||||||||||||||||| || |||  |||||   ||||  |||||||| |||||||||||||||| |||||||| ||||||    
T  19467486 tttaccggtgtttttggtaaacaaaacgctagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaat 19467573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 147 - 232
Target Start/End: Original strand, 19565167 - 19565254
Alignment:
Q  147 tttaccggtgtttttggtaaacaagacactaattttaag--agtttcttgcaggaccaaactagaaatcctaggacatgttatgcaat 232  Q
    |||||||||||||||||||||||| || |||  |||||   ||||  |||||||| |||||||||||||||| |||||||| ||||||    
T  19565167 tttaccggtgtttttggtaaacaaaacgctagatttaaattagttatttgcaggatcaaactagaaatcctatgacatgttgtgcaat 19565254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 3634199 - 3634302
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagac-actaattttaag-agtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcag 242  Q
    |||||||||||||||||||||||||| |  |||| ||||||  | || ||||||||| |||||| ||| |||||||||||||| ||||||| ||||||||    
T  3634199 tgtttaccggtgtttttggtaaacaataagactagttttaaataattacttgcaggatcaaactggaagtcctaggacatgttgtgcaatgatttttcag 3634298  T
Q  243 aaaa 246  Q
    ||||    
T  3634299 aaaa 3634302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 22259511 - 22259446
Alignment:
Q  191 cttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaatg 256  Q
    |||||||||  |||||||||||||||  ||||||| |||||||||||||||||||| |||||||||    
T  22259511 cttgcaggatgaaactagaaatcctataacatgttgtgcaatgttttttcagaaaatgtttgaatg 22259446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 16142377 - 16142421
Alignment:
Q  201 caaactagaaatcctaggacatgttatgcaatgttttttcagaaa 245  Q
    ||||||||||||||||||||||||| ||||| |||||| ||||||    
T  16142377 caaactagaaatcctaggacatgttgtgcaaagtttttccagaaa 16142421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 256
Target Start/End: Original strand, 6038778 - 6038843
Alignment:
Q  191 cttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaatg 256  Q
    ||||||||| ||||||||||||||||||  || || |||||| ||||| ||||||| | |||||||    
T  6038778 cttgcaggatcaaactagaaatcctagggaatattgtgcaatctttttccagaaaatgcttgaatg 6038843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 145 - 238
Target Start/End: Original strand, 1085484 - 1085572
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagaca-ctaattttaagagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttt 238  Q
    |||||||||||||||||||||||||| | | ||||||||||       |||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  1085484 tgtttaccggtgtttttggtaaacaataaaactaattttaaa------ttgcaggatcaaactagaaatcctaggacatgttgtgcaatgatttt 1085572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Complemental strand, 14132379 - 14132335
Alignment:
Q  194 gcaggaccaaactagaaatcctaggacatgttatgcaatgttttt 238  Q
    |||||| |||||||||||||| |||||||||| ||||||||||||    
T  14132379 gcaggatcaaactagaaatccaaggacatgttgtgcaatgttttt 14132335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 243
Target Start/End: Original strand, 5495370 - 5495417
Alignment:
Q  196 aggaccaaactagaaatcctaggacatgttatgcaatgttttttcaga 243  Q
    |||| ||||| ||||||||||||||||||| ||||| |||||||||||    
T  5495370 aggatcaaaccagaaatcctaggacatgttgtgcaaagttttttcaga 5495417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 144 - 172
Target Start/End: Complemental strand, 14132431 - 14132403
Alignment:
Q  144 atgtttaccggtgtttttggtaaacaaga 172  Q
    |||||||||||||||||||||||||||||    
T  14132431 atgtttaccggtgtttttggtaaacaaga 14132403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 191 - 256
Target Start/End: Complemental strand, 21166472 - 21166407
Alignment:
Q  191 cttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaatg 256  Q
    |||| |||| |||||||||||| |||||||||||| ||||||| |||| ||||||| || ||||||    
T  21166472 cttgtaggatcaaactagaaattctaggacatgttgtgcaatgattttccagaaaatgtatgaatg 21166407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 256
Target Start/End: Complemental strand, 21171096 - 21171028
Alignment:
Q  185 gagtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaatg 256  Q
    ||||| ||||||||| |||||||||||| ||||||||||   ||||||| |||| ||||||| || ||||||    
T  21171096 gagttacttgcaggatcaaactagaaattctaggacatg---tgcaatgattttccagaaaatgtatgaatg 21171028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 245
Target Start/End: Complemental strand, 31533299 - 31533262
Alignment:
Q  208 gaaatcctaggacatgttatgcaatgttttttcagaaa 245  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  31533299 gaaatcctaggacatgttgtgcaaagttttttcagaaa 31533262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 24878181 - 24878225
Alignment:
Q  194 gcaggaccaaactagaaatcctaggacatgttatgcaatgttttt 238  Q
    |||||| ||||  ||||||||||||||||||| ||||||||||||    
T  24878181 gcaggatcaaagcagaaatcctaggacatgttgtgcaatgttttt 24878225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 28623184 - 28623281
Alignment:
Q  145 tgtttaccggtgtttttggtaaacaagaca-ctaattttaaga-gtttcttgcaggaccaaactagaaatcctaggacatgttatgcaatgttttttc 240  Q
    |||||||||||||||||||||||||| |   |||||||||| | ||| |||| | || ||||||| ||||||||  ||||||| ||||||||||||||    
T  28623184 tgtttaccggtgtttttggtaaacaaaaatgctaattttaacatgttacttgaaagatcaaactaaaaatcctaaaacatgttgtgcaatgttttttc 28623281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 17615084 - 17615128
Alignment:
Q  194 gcaggaccaaactagaaatcctaggacatgttatgcaatgttttt 238  Q
    |||||| ||||| ||||||||||||||||||| ||||||||||||    
T  17615084 gcaggatcaaaccagaaatcctaggacatgttgtgcaatgttttt 17615128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0167 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 256
Target Start/End: Complemental strand, 788 - 733
Alignment:
Q  201 caaactagaaatcctaggacatgttatgcaatgttttttcagaaaaggtttgaatg 256  Q
    ||||||||||||||||||||||||| |||||| ||||| || |||| || ||||||    
T  788 caaactagaaatcctaggacatgttgtgcaatctttttccataaaatgtatgaatg 733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University