View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21648_low_8 (Length: 489)

Name: NF21648_low_8

Description: NF21648

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF21648_low_8

[»] chr8 (1 HSPs)

Alignment Details

Target: chr8 (Bit Score: 447; Significance: 0; HSPs: 1)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 447; E-Value: 0

Query Start/End: Original strand, 11 - 489

Target Start/End: Original strand, 3710384 - 3710862

Alignment:

Q	11	caaagggaatcatatgcattcgagcgtgttcccaagaataaactctatcaacgacccacaaaaatggtattcggaccatccgacccctacaattcgacct	110	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	3710384	caaagggaatcatatgcattcgagcgtgttcccaagaataaactctatcaacgacccacaaaaatggtattcggaccatccgacccctacaagtcgacct	3710483	T

Q	111	agaaggcatttcagacaattttatcaagaagatgtgtagtacccgttttttggaatcattgacacgcaacaataaggttagatctacataaattaacaat	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3710484	agaaggcatttcagacaattttatcaagaagatgtgtagtacccgttttttggaatcattgacacgcaacaataaggttagatctacataaattaacaat	3710583	T

Q	211	ctacctctcttcttagtcaacattcgaccccctaaggcctccaagaacgaatcttttcattatcaaggatactggacccaaagggcacatatacaacatg	310	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3710584	ctacctctcttcttagtcaacgtttgaccccctaaggcctccaagaacgaattttttcattatcaaggatactggacccaaagggcacatatacaacatg	3710683	T

Q	311	cttttatttcaaagacttggtcctgctatgagccatcatttgactccctcaattacactaatacattgaagggggaccccaaaggtcgtagagatacaac	410	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3710684	cttttatttcaaagacttggtcctgctatgagccatcatttgactccctcaactacactaatacattgaagagggaccccaaaggtcgtagagatacaac	3710783	T

Q	411	acactttcggtccaacgtttaacggaaaaacaagccatcaccttacattgtcaaccaacggcttcataggaaattgttc	489	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	3710784	acactttcggtccaacgtttgacgaaaaaacaagccatcaccttacattgtcaaccaacggcttcataggaaattgttc	3710862	T

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