View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21648_low_9 (Length: 489)
Name: NF21648_low_9
Description: NF21648
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21648_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 3659123 - 3658661
Alignment:
| Q |
11 |
cacagacaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaataccc |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659123 |
cacacacaaaagggaaaatgtttataatcgatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaataccc |
3659024 |
T |
|
| Q |
111 |
aacccttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaaca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3659023 |
aacccttctctcatatcaacaacttcatccattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaaca |
3658924 |
T |
|
| Q |
211 |
acgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcagg |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658923 |
acgatccaggacaagctcttctccctaatccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcagg |
3658824 |
T |
|
| Q |
311 |
taaaaacttttcaggctctaaccaaatacttggatctctatgtaatttccacacatttgcaaacacacgtgtcccttttggtacataatagtcttgaatg |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658823 |
taaaaacttttcaggctctaaccaaatacttggatctctatgtaatttccacacatttgcaaacacacgtgtcccttttggtacataatagtcttgaatg |
3658724 |
T |
|
| Q |
411 |
taacaatcttctgttgcttcatggggtactaatagtggacctggagggtataaccttaaagtt |
473 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3658723 |
taacaatcttctgttacttcatggggtactaatagtggacctggagggtataaccttaaagtt |
3658661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 40 - 473
Target Start/End: Complemental strand, 7843348 - 7842915
Alignment:
| Q |
40 |
gatagagttcacatgataatcgcggggtcaaaacaacttgcaatggagttaacttaggcaaggtaatacccaacccttctctcatatcaacaacttcatc |
139 |
Q |
| |
|
||||||||||| | | |||||| ||||||||||||||||||||||||||||||||||| || || || ||||| |||||||||||||||||||||||||| |
|
|
| T |
7843348 |
gatagagttcaaagggtaatcgtggggtcaaaacaacttgcaatggagttaacttaggtaaagttattcccaaaccttctctcatatcaacaacttcatc |
7843249 |
T |
|
| Q |
140 |
cattggcacttccaaatcaaacccatgaagtaaacgagcaagtgtaatgagaataacttgtgtagcaaacaacgatccaggacaagctcttctccctaat |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7843248 |
cattggcacttccaaatcaaacccatgaagaagacatgcaagtgtaatgagactattttgtgtagcaaacaaagatccaggacaagctcttctccctaat |
7843149 |
T |
|
| Q |
240 |
ccaaaaggaaggtactcaaaatggtgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaaacttttcaggctctaaccaaatac |
339 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7843148 |
ccaaaaggaaggtactcaaaatgatgactttcatgatcaatttctccattctcattaataaacctttcaggtaaaaacttttcaggctctgaccaaatac |
7843049 |
T |
|
| Q |
340 |
ttggatctctatgtaatttccacacatttgcaaacacacgtgtcccttttggtacataatagtcttgaatgtaacaatcttctgttgcttcatggggtac |
439 |
Q |
| |
|
|||||||||||||||||||||| ||||| ||| |||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||||||| | |
|
|
| T |
7843048 |
ttggatctctatgtaatttccatacattgaaaaatacacgtgttccttttggtacataatagccttgaatgttacaatcttctgtggcttcatggggtgc |
7842949 |
T |
|
| Q |
440 |
taatagtggacctggagggtataaccttaaagtt |
473 |
Q |
| |
|
|| ||||||| ||| ||||||||||| |||||| |
|
|
| T |
7842948 |
tagtagtggagctgctgggtataacctcaaagtt |
7842915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University