View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21649_high_1 (Length: 469)
Name: NF21649_high_1
Description: NF21649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21649_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 10 - 454
Target Start/End: Original strand, 931163 - 931607
Alignment:
| Q |
10 |
attattctccattttaaggtaattcccaacattttgcttttttattactttctttaggaagcacatacaccgaacacgacatacacgccgacattatcaa |
109 |
Q |
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| T |
931163 |
attattctccattttaaggtaattcccaacatttttcttttttattactttctttaggaagcacatacaccgaacacgacatacacgccgacattagcaa |
931262 |
T |
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| Q |
110 |
taatataagaaaacgaattcaaatgtaatcacatgtatcgtgtcggtgttaaacactagacccgcattcaatttaaagtgttggtactacattcatcgtt |
209 |
Q |
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| T |
931263 |
taatttaagaaaatgaattcaaatgtaatcacatgtatcgtgtcggtgttaaacactggacacgctttcaatataaagttttggtactacattcatcgtt |
931362 |
T |
|
| Q |
210 |
taattatgagtattaatgttatttccttattgctacttgcagaaccatagaattagaatcttacattggatgattccaacctcttgtcttgtggtatctg |
309 |
Q |
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| T |
931363 |
taattatgagtattaatgttatttccttattgctacttgcagaaccatagaattagaatcttacattggatgattccaacctcttgtcttgtggtatctg |
931462 |
T |
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| Q |
310 |
gcattgccttggatttatttggtaaccattatctcttaactctttttagtattaannnnnnnagtaataaattaattaacataagttcttgttgtaatgt |
409 |
Q |
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| T |
931463 |
gcattgccttggatttatttggtaaccattatctcttaactctttttagtattaatttttttagtaataaattaattaacataagctcttgttgtaatgt |
931562 |
T |
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| Q |
410 |
aggaatgcatgtaaataaagttctctactcatttagttatacttg |
454 |
Q |
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| T |
931563 |
aggaatgcatgtaaataaagttctctactcatttagttatacttg |
931607 |
T |
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