View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21649_high_13 (Length: 308)
Name: NF21649_high_13
Description: NF21649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21649_high_13 |
 | |
|
| [»] scaffold1813 (1 HSPs) |
| | |
|
| [»] scaffold0850 (1 HSPs) |
| | |
|
| [»] scaffold0537 (1 HSPs) |
| | |
|
| [»] scaffold0251 (1 HSPs) |
| | |
|
| [»] scaffold0184 (1 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
| [»] scaffold0916 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 42097952 - 42098239
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatc |
108 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
42097952 |
cacctcctcatcctctgcctc-gtcctgcggcgggtaaaacattatatcctcctccatccgatcatatccaacaaaaccctcctcatacacagccttatc |
42098050 |
T |
|
| Q |
109 |
atgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgg |
208 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
42098051 |
atgtgccgatgtcggatcaaccacctgggaggagtaatccatctgtgaatgtgaacccgacccatctcctccacctatcctcaagtccctacgtctccgg |
42098150 |
T |
|
| Q |
209 |
gtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
42098151 |
gtctttggaacacacgggtgttcaacctccatctcctttcgaacgctatttgtcatagcaggtttacctttgcgcaccctaccctctct |
42098239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 9 - 295
Target Start/End: Original strand, 8318505 - 8318790
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatc |
108 |
Q |
| |
|
||||||||||||||||| ||| ||||| |||||||| ||||||| ||| |||||||||||||||||||| |||||||||||||||||||||| ||| ||| |
|
|
| T |
8318505 |
cacctcctcatcctctgcctc-gtcctccggctgatgaaacattctattctcctccatccgatcatatccaacaaaaccctcctcatacacatcctcatc |
8318603 |
T |
|
| Q |
109 |
atgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgg |
208 |
Q |
| |
|
||||| || |||| |||||||||||||||| | |||||||||||||||||||||||| |||||||||||| || |||||||||||||| ||||||| ||| |
|
|
| T |
8318604 |
atgcgtcggtgtcggatcaaccacctgggatgagtaatccatctgtgaatgtgaacctgacccatctcctccacctatcctcaagtccttacgtcttcgg |
8318703 |
T |
|
| Q |
209 |
gtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctct |
295 |
Q |
| |
|
||||||||||||||||||| ||||||||| ||||||||||||| | |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
8318704 |
gtctttggaacatacgggttttcaacctcaatctcctttcgagtgttatttgtcatagcagatttacctttgcacaccctaccctct |
8318790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 40491567 - 40491459
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
40491567 |
tcacctgccacctcctcatcctctgcctc-gtcctgcggctgataaaacattctatcctcctccatccgatcatatccaacaaaaacctcctcatacaca |
40491469 |
T |
|
| Q |
101 |
gccttatcat |
110 |
Q |
| |
|
|||| ||||| |
|
|
| T |
40491468 |
gcctcatcat |
40491459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 44118120 - 44118271
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcgg---ctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctc---atacacagc |
102 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| |||| |||||||| | |||||||||||||||||||||| |||||||||||| || |||| || | |
|
|
| T |
44118120 |
cacctcctcatcctctgcctc-gtcctgcggtgactgaaaaaacattctctcctcctccatccgatcatatccaacaaaaccctcatccgcatacccaac |
44118218 |
T |
|
| Q |
103 |
cttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
| ||||||||| | |||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
44118219 |
ataatcatgcgctggtgtcggatcaaccacctgggaggagtaatccacctgtg |
44118271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 142 - 297
Target Start/End: Complemental strand, 23878711 - 23878559
Alignment:
| Q |
142 |
gtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgggtctttggaacatacgggtgttcaacctccatc |
241 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| | ||||||||||||||||| ||||| || |||| |||||||||||| |||| ||| | |
|
|
| T |
23878711 |
gtaatccatctgtgattgtgaacccgacctctctcc---acctatcctcaagtccctatgtctctagggctttagaacatacgggttttcagcctatagt |
23878615 |
T |
|
| Q |
242 |
tcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||| ||| |||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
23878614 |
tccttccgatagctatttgtcatagatactttacctttgcacaccctaccctctct |
23878559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Complemental strand, 41267838 - 41267792
Alignment:
| Q |
31 |
gtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||| | |||||| |
|
|
| T |
41267838 |
gtcctccggctgataaaacattctatcctcctccatccaaacatatc |
41267792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 7251064 - 7250769
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacaca |
100 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
7251064 |
tcacttgccacctcctcatcctctgcctc-gtcctgctgctgataaaacattctatcctcctccatccgatcatatccaacaaaaccctcctcatacaca |
7250966 |
T |
|
| Q |
101 |
gccttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctac |
200 |
Q |
| |
|
|||| |||||||| || |||| |||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
|
|
| T |
7250965 |
gcctcatcatgcgtcggtgtcggatcaaccacctgggatgagtaatccatctgtgaatgtgaacccgacccatctcctccacctatcctcaagtccctac |
7250866 |
T |
|
| Q |
201 |
gtctccgggtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
7250865 |
gtctccggatctttggaacatatgggtgttcaacctccatctcctttcgagcgctatttgtcatagcaggtttacctttgcgcaccctaccctctct |
7250769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 8 - 297
Target Start/End: Complemental strand, 19871640 - 19871352
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttat |
107 |
Q |
| |
|
|||||||||||||||||| ||| ||||| |||||||||||| | | |||||||||||||||||||||||| |||||||||||||||||||||||||| || |
|
|
| T |
19871640 |
ccacctcctcatcctctgcctc-gtcctacggctgataaaatactctatcctcctccatccgatcatatccaacaaaaccctcctcatacacagcctcat |
19871542 |
T |
|
| Q |
108 |
catgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccg |
207 |
Q |
| |
|
||||| || |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| |
|
|
| T |
19871541 |
tatgcgtcggtgtcggatcaaccacctgggaggagtaatccatctgtgaatgtgaacccgacccatctcctccacctatcctcaagtccctacgtctccg |
19871442 |
T |
|
| Q |
208 |
ggtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
|||||||| ||||||||||| ||||||||| ||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||| |
|
|
| T |
19871441 |
ggtctttgaaacatacgggttttcaacctcaatctcctttcgagcgctatttattatagcagttttacctttgcgcaccctaccctctct |
19871352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Complemental strand, 23063537 - 23063470
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||| |||||||||| |||| |||||||| |||||||||| |
|
|
| T |
23063537 |
cacctcctcatcctctgcctc-gtcctgcggctaataaaacattatatcatcctccattcgatcatatc |
23063470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 77
Target Start/End: Original strand, 9041309 - 9041374
Alignment:
| Q |
11 |
cctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||| |||||||||| ||| |||||| ||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
9041309 |
cctcatcatcctctgcctc-gtcctgtggctgataaaacattcgatcctcctccatctgatcatatc |
9041374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 297
Target Start/End: Original strand, 12027208 - 12027495
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatc |
108 |
Q |
| |
|
||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
12027208 |
cacctcctcatcctctgcctc-gtcctgcggctgataaaacattctatcctcctccatctgatcatatccaacaaaaccctcctcatacacagcctcatc |
12027306 |
T |
|
| Q |
109 |
atgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgg |
208 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
|
|
| T |
12027307 |
atgcgccggtgtcggatcaaccacctgggaggagtaatccatctgtgaatgtgaacccgacccatctcctccacctatcctcaagtccctacgtctccgg |
12027406 |
T |
|
| Q |
209 |
gtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| | |||||||| |
|
|
| T |
12027407 |
gtctttggaacatacaggttttcaacctccatctcctttcgagcgctatttgtcataacaggtttacctttgcgcacctttccctctct |
12027495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 31303444 - 31303369
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||||||||||||||||||||| | || |||||||||||||||||||||| |||| |||||||||||||| |||| |
|
|
| T |
31303444 |
tcacctgccacctcctcatcctccgcctt-gtcctgcggctgataaaacattatatcatcctccatccgatcttatc |
31303369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 36 - 90
Target Start/End: Original strand, 54603389 - 54603443
Alignment:
| Q |
36 |
gcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctc |
90 |
Q |
| |
|
|||||||| ||| |||| | |||||||||||||||||||||| |||||||||||| |
|
|
| T |
54603389 |
gcggctgaaaaagcattatctcctcctccatccgatcatatccaacaaaaccctc |
54603443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 55740550 - 55740595
Alignment:
| Q |
32 |
tcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||||||||||||||||| | | ||||||||||||||||||||||| |
|
|
| T |
55740550 |
tcctgcggctgataaaacctatcatcctcctccatccgatcatatc |
55740595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 55763515 - 55763447
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||||||||| |||||| ||| || || |||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
55763515 |
ccacctcctcaccctctgcctcc-tcatgtggctgataaaacatatcatcctcctccatccgatcatatc |
55763447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 55827895 - 55827827
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||||||||| |||||| ||| || || |||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
55827895 |
ccacctcctcaccctctgcctcc-tcatgtggctgataaaacataccatcctcctccatccgatcatatc |
55827827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 5 - 297
Target Start/End: Complemental strand, 38109190 - 38108899
Alignment:
| Q |
5 |
ctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagcct |
104 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||||||||||||| || |||||||||||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
38109190 |
ctgccatctcctcatcctctgcctc-gtcctgcggctgataaaactttatatcctcctccatccgatcatatccaacaaaacccccctcatacacagcct |
38109092 |
T |
|
| Q |
105 |
tatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtct |
204 |
Q |
| |
|
||||||| | || |||| ||||||||||| ||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |||||| |
|
|
| T |
38109091 |
tatcatgtgtcggtgtcgaatcaaccacctaggaggagtaatccatatgtgaatgtgaacccgacccatctcctccacctatcctcaagtccccacgtct |
38108992 |
T |
|
| Q |
205 |
ccgggtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
38108991 |
ccgggtctttggaacattcgggtgttcaacctccatctcctttcgagcgctatttgtcatagcaggtttacctttgcgcatcctaccctctct |
38108899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 297
Target Start/End: Original strand, 53561381 - 53561661
Alignment:
| Q |
16 |
tcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatcatgcgcc |
115 |
Q |
| |
|
|||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
53561381 |
tcatcctctgtctc-gtcctgcagctgataaaacattatatcctcctccatccgatcatatccaacaaaaccctcctcgtacacagcctcatcatgtgcc |
53561479 |
T |
|
| Q |
116 |
gatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgggtctttg |
215 |
Q |
| |
|
| |||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||||| |
|
|
| T |
53561480 |
ggtgtcggatcaaccacctgggaggagtaatccatatgtgaatgtgaacccgacccatctcctccacctatcctcaagcccctacgtctccgggtctttg |
53561579 |
T |
|
| Q |
216 |
gaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
53561580 |
gaacatacgggtattcaacctccatctcctttcgagcgctatttttcatagcaggtttaccttcgcgcaccctaccctctct |
53561661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 9 - 283
Target Start/End: Original strand, 4949645 - 4949918
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatc |
108 |
Q |
| |
|
||||||||||||||||| ||| ||| |||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||| | ||||| |
|
|
| T |
4949645 |
cacctcctcatcctctgcctc-gtcatgcggctgataaaacattatatccttctccatccgatcatatccaacaaaaccctcctcatacacaacattatc |
4949743 |
T |
|
| Q |
109 |
atgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgg |
208 |
Q |
| |
|
||||| | |||| ||||| ||| || || | || ||| |||||||| |||||||||||||| ||| || || |||||||||||||||||||||||||| |
|
|
| T |
4949744 |
atgcgttggtgtcgcatcaatcacatgagaagagttatctatctgtgactgtgaacccgacccctctgctccacctatcctcaagtccctacgtctccgg |
4949843 |
T |
|
| Q |
209 |
gtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgc |
283 |
Q |
| |
|
| |||||||| ||||| ||||||| ||||||||||||||| ||| ||||||||||||||| |||||||||||||| |
|
|
| T |
4949844 |
gcctttggaatatacgagtgttcagcctccatctcctttcaagcactatttgtcatagcaggtttacctttgcgc |
4949918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 9 - 155
Target Start/End: Complemental strand, 48162670 - 48162525
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatc |
108 |
Q |
| |
|
||||||||||||||||| || ||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||| |
|
|
| T |
48162670 |
cacctcctcatcctctgcatc-gtcctacggatgataaaacattttatcctcctccatccgatcatatccaacaaaaccctcctcatacacagcatcatc |
48162572 |
T |
|
| Q |
109 |
atgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
|||||| | |||| |||||||||||||||||| ||||||||| |||| |
|
|
| T |
48162571 |
atgcgctggtgtcggatcaaccacctgggaggagtaatccatatgtg |
48162525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 182703 - 182778
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||| || ||||||||||||||||||||| |
|
|
| T |
182703 |
tcacctgccacctcctcatcctctgcctc-gtcctgcggctgataaaacattctaccctcctccatccgatcatatc |
182778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 45032522 - 45032447
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45032522 |
tcacctgcctcctcctcatcctctgtctc-gtcctgcggctgataaaacattttatcctccttcatccgatcatatc |
45032447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 55147742 - 55147599
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaa---ccctcctcatacacagcct |
104 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||| | ||||| | ||| ||||| ||| | |
|
|
| T |
55147742 |
ccacctcctcatcctctacctc-gtcctgcggctgataaaacatcctatcctcctccatccgatcatatccagcaaaagcttcatccgcataccaagcat |
55147644 |
T |
|
| Q |
105 |
tatcatgcgccgatgtcagatcaaccacctgggaggtgtaatcca |
149 |
Q |
| |
|
||||||||| | ||| |||||||||| ||||||| |||||||| |
|
|
| T |
55147643 |
aatcatgcgctggtgttggatcaaccacttgggaggagtaatcca |
55147599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 9 - 90
Target Start/End: Complemental strand, 18906148 - 18906065
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggc---tgataaaacattttatcctcctccatccgatcatatctaacaaaaccctc |
90 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| ||| | |||||| | |||||||||||||||||||||| |||||||||||| |
|
|
| T |
18906148 |
cacctcctcatcctctgcctc-gtcctgcggcggctgaaagaacattatctcctcctccatccgatcatatccaacaaaaccctc |
18906065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 18945114 - 18945189
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||||| |||||| |||||||||| ||| ||||| |||| |||| |||||| ||||||||| |||||||||||||| |
|
|
| T |
18945114 |
tcacctaccaccttttcatcctctgcctc-gtcctccggcagatagaacattatatcctcctacatccgatcatatc |
18945189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 45032415 - 45032378
Alignment:
| Q |
118 |
tgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
45032415 |
tgtcagatcaaccacctgggaggagtaatccatatgtg |
45032378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 13707318 - 13707024
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacaca |
100 |
Q |
| |
|
||||||||||||| ||||||||||| ||| ||||| |||||||||||||||| |||| ||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
13707318 |
tcacctgccaccttctcatcctctgcctc-gtcctacggctgataaaacattctatcatcctccatccgatcatatccaacaaaacc-tcctcatacaca |
13707221 |
T |
|
| Q |
101 |
gccttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctac |
200 |
Q |
| |
|
| | ||||||||| | |||| ||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||| || |||||||||||||||||| |
|
|
| T |
13707220 |
tcatcatcatgcgctggtgtcgaatcaaccacctgggaggagtaatccatctgtgaatctgaacccgacctatctcctccacctatcctcaagtccctac |
13707121 |
T |
|
| Q |
201 |
gtctccgggtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
13707120 |
gtctccgggtctttggaacatacaggtgttcaaccttcatctcctttcgagcgctatttgtcatagcaggtttacctttgcgcaccctaccctctct |
13707024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 46200040 - 46200325
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||| |||||||||||||| ||| ||||| |||| |
|
|
| T |
46200040 |
tcacctgccacctcctcatcctctgcctc-gtcctgcggctgataaaacatcttatcctcctacatccgatcatatccctgaaatccctctgtatac--- |
46200135 |
T |
|
| Q |
101 |
gccttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctac |
200 |
Q |
| |
|
|||| || | |||| |||||||||||||||||| ||||||||| ||||| ||||||||||||||||||||| | |||||||| ||| ||||| |
|
|
| T |
46200136 |
------tcatacgtctgtgtcggatcaaccacctgggaggagtaatccatttgtga-tgtgaacccgacccatctcctccgcctatcctcgagttcctac |
46200228 |
T |
|
| Q |
201 |
gtctccgggtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
46200229 |
atctccgggtatttggaacatacgggtgttcaacctccatctcctttcgaacgctatttgtcataacaggtttacctttgcgcaccctaccctctct |
46200325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 154
Target Start/End: Original strand, 27108156 - 27108277
Alignment:
| Q |
36 |
gcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccc---tcctcatacacagccttatcatgcgccgatgtcagatcaaccac |
132 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||||||| |||||||||| ||| |||| || | | ||||||||| | |||| |||||||||| |
|
|
| T |
27108156 |
gcggctgaaaaaacattctctcctcctccatccgatcatatccaacaaaaccctcatccgcatatccaacataatcatgcgctggtgtcggatcaaccac |
27108255 |
T |
|
| Q |
133 |
ctgggaggtgtaatccatctgt |
154 |
Q |
| |
|
|||||||| |||||||| |||| |
|
|
| T |
27108256 |
ctgggaggagtaatccacctgt |
27108277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 5 - 90
Target Start/End: Complemental strand, 18240883 - 18240796
Alignment:
| Q |
5 |
ctgccacctcctcatcctctgactcagtcct---gcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctc |
90 |
Q |
| |
|
||||||||||||||||||||| ||| ||||| |||||||| |||||||| | |||||||||||| ||||||||| |||||||||||| |
|
|
| T |
18240883 |
ctgccacctcctcatcctctgcctc-gtcctacggcggctgaaaaaacattatctcctcctccatctgatcatatccaacaaaaccctc |
18240796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 77
Target Start/End: Original strand, 42057362 - 42057429
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||| | |||||||| |
|
|
| T |
42057362 |
cacctcatcatcctctgtctc-gtcctgcggctgataaaacattatatcctcctccattcaatcatatc |
42057429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 149
Target Start/End: Original strand, 4914086 - 4914232
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgat----aaaacattttatcctcctccatccgatcatatctaacaaaac---cctcctcatacacag |
101 |
Q |
| |
|
||||||||||||||||| ||| |||||||||| | | |||||||| | ||||||||||| |||||||||| |||||||| | ||| ||||| ||| |
|
|
| T |
4914086 |
cacctcctcatcctctgcctc-gtcctgcggcggctgaaaaaaacattctctcctcctccattcgatcatatccaacaaaaccttcatccgcatacccag |
4914184 |
T |
|
| Q |
102 |
ccttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatcca |
149 |
Q |
| |
|
| | || |||||| | |||| |||||||||||||||| | |||||||| |
|
|
| T |
4914185 |
cataattatgcgctggtgtcggatcaaccacctgggacgagtaatcca |
4914232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 18240755 - 18240661
Alignment:
| Q |
64 |
catccgatcatatctaacaaaaccctcctc---atacacagccttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
|||| ||||||||||||||||| |||| || |||| |||| ||| ||||| | |||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
18240755 |
catctgatcatatctaacaaaatcctcatccgcatacccagcaaaatcgtgcgctggtgtcggatcaaccacctgggaggagtaatccacctgtg |
18240661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 13 - 297
Target Start/End: Original strand, 1803968 - 1804251
Alignment:
| Q |
13 |
tcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatcatgc |
112 |
Q |
| |
|
||||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||| |
|
|
| T |
1803968 |
tcctcatcctctgcctc-gtcctgcggttgataaaacattctatcctcctccatccgatcatatccaacaaaaccctcctcatacacaacctcatcatgc |
1804066 |
T |
|
| Q |
113 |
gccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgggtct |
212 |
Q |
| |
|
||||||||| |||||||||||| ||||| |||||| ||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||| ||| | |
|
|
| T |
1804067 |
gccgatgtcggatcaaccaccttggaggagtaatctatctgtgaatgtgaacccgactcatcgccttcacctatcctcaagtccctacgtctccaggtat |
1804166 |
T |
|
| Q |
213 |
ttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
1804167 |
ttggaacatacgggttttcaacctcaatctcctttcaagcgctatttgacatagcagttttacctttgcgcaccctaccctctct |
1804251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 9 - 297
Target Start/End: Complemental strand, 41958865 - 41958578
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatc |
108 |
Q |
| |
|
||||||||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
41958865 |
cacctcctcatcctctgcctc-gtcctgcgactgataaaacattatatcctcctccatccgattatatccaacaaaaccctcctcatacacagcctcatc |
41958767 |
T |
|
| Q |
109 |
atgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgg |
208 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||||||| || ||||||||||||||||||||||| | |
|
|
| T |
41958766 |
atgcgccggtgtcggatcaaccacctgggaggagtaatccatctgtggatgtaaacccgacccatctcctccacctatcctcaagtccctacgtctctag |
41958667 |
T |
|
| Q |
209 |
gtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
|||||||||||| || || ||||||||| ||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| |
|
|
| T |
41958666 |
gtctttggaacagacaagttttcaacctcaatctcctttcgagcgctatttgtcataataattttacctttgcacaccctaccctctct |
41958578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 8 - 155
Target Start/End: Complemental strand, 31593682 - 31593533
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcct---catacacagcct |
104 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||||||||||||| || ||||||||| |||||||||||||| | ||||| |||| | ||||| || | | |
|
|
| T |
31593682 |
ccacctcctcatcctctgcctc-gtcatgcggctgataaaatatcctatcctccttcatccgatcatatccagcaaaagcctcatctgcatacccaacat |
31593584 |
T |
|
| Q |
105 |
tatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
31593583 |
aatcatgcgctggtgtcggatcaaccacctgggaggagtaatccacctgtg |
31593533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 46528344 - 46528419
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
46528344 |
tcacctgccacctcctcatcctctacctc-gtcctccggctgataaaacattatatcctcctccatccgatcatatc |
46528419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 34199137 - 34199062
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
34199137 |
tcacctgccacctcctcatcctctgcctc-gtcctacggctgataaaacattcgatccttctccatccgatcatatc |
34199062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 17732763 - 17732846
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcgg---ctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctc |
90 |
Q |
| |
|
||||||||||||||||| ||| ||||||||| ||||||||| || |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
17732763 |
cacctcctcatcctctgcctc-gtcctgcggcggctgataaaatatcatatcctcctccatccgatcatatccaacaaaaccctc |
17732846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 11408916 - 11409020
Alignment:
| Q |
193 |
gtccctacgtctccgggtctttggaacatacgggtgttcaacctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccc |
292 |
Q |
| |
|
||||||||| ||||||||||| |||||||| || |||| ||| || |||||| || |||||||||||||| |||||||||||||| ||||||| |
|
|
| T |
11408916 |
gtccctacgcttccgggtctttagaacatacaagttttcagcctgcagctccttctgatgactatttgtcatagctactttacctttgcgcatcctaccc |
11409015 |
T |
|
| Q |
293 |
tctct |
297 |
Q |
| |
|
||||| |
|
|
| T |
11409016 |
tctct |
11409020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 77
Target Start/End: Original strand, 13952398 - 13952440
Alignment:
| Q |
35 |
tgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||||||||||||| || || |||||||||||||||||||||| |
|
|
| T |
13952398 |
tgcggctgataaaatatattctcctcctccatccgatcatatc |
13952440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 8e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 33 - 292
Target Start/End: Complemental strand, 5614965 - 5614706
Alignment:
| Q |
33 |
cctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacacagccttatcatgcgccgatgtcagatcaaccac |
132 |
Q |
| |
|
||||||| |||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||| |||||||||| |
|
|
| T |
5614965 |
cctgcggttgataaaatattctatcctccttcatccgatcatattcaacaaaaccctcctcatacacagcctcatcatgcgccggtgttggatcaaccac |
5614866 |
T |
|
| Q |
133 |
ctgggaggtgtaatccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgggtctttggaacatacgggtgttca |
232 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
5614865 |
ctgggtggagtaatccatctgtgaatgtgaacccgacccatctcctccacctatcctcaagtccctacgtctccgggtctttgaaacatacgggttttca |
5614766 |
T |
|
| Q |
233 |
acctccatctcctttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccc |
292 |
Q |
| |
|
||||| |||| ||||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
5614765 |
acctcaatcttctttcgagcgctatttgtcatagcagttttacccttgcgcaccctaccc |
5614706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 1259076 - 1259224
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1259076 |
tcacctgccacctcctcatcctctgcctc-gtcctgcggctgataaaaaattctatcctcctccatccgatcatattcaacaaaaccctcctcatacaca |
1259174 |
T |
|
| Q |
101 |
gccttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccat |
150 |
Q |
| |
|
|| | ||||||||| | ||||||||||| ||||||||||| ||||||||| |
|
|
| T |
1259175 |
gcatcatcatgcgctggtgtcagatcaagcacctgggaggagtaatccat |
1259224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1813 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold1813
Description:
Target: scaffold1813; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 156 - 297
Target Start/End: Original strand, 135 - 276
Alignment:
| Q |
156 |
aatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgggtctttggaacatacgggtgttcaacctccatctcctttcgagcgct |
255 |
Q |
| |
|
||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
135 |
aatgtgaacccgacccatctcctccacctatcctcaagtccctacgtctctgggtctttggaacatacgggtgttcaacctccatctcctttcgagcgct |
234 |
T |
|
| Q |
256 |
atttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||| ||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
235 |
atttgccatagcaggtttacctttgtgcaccctaccctctct |
276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0850 (Bit Score: 104; Significance: 7e-52; HSPs: 1)
Name: scaffold0850
Description:
Target: scaffold0850; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 343 - 185
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacaca |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
343 |
tcacctgccacctcctcatcctctgcctc-gtcctgcggctgataaaacattatatcctcctccatccgatcatatccaacaaaaccatccccatacacc |
245 |
T |
|
| Q |
101 |
gccttatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtgaatgt |
160 |
Q |
| |
|
|| | ||||||||| | |||| |||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
244 |
gcatcatcatgcgctggtgtcggatcaaccacctgggaggagtaatccatctgtgaatgt |
185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 145 - 297
Target Start/End: Complemental strand, 34458017 - 34457865
Alignment:
| Q |
145 |
atccatctgtgaatgtgaacccgacccatctccttcatctatcctcaagtccctacgtctccgggtctttggaacatacgggtgttcaacctccatctcc |
244 |
Q |
| |
|
|||||||||||| |||| ||||||||| ||| || || ||||||||||||||||||||||| || ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
34458017 |
atccatctgtgactgtggacccgacccctctactccacctatcctcaagtccctacgtctctaggcctttggaacatgcgggtgttcagcctccatctcc |
34457918 |
T |
|
| Q |
245 |
tttcgagcgctatttgtcatagcatgtttacctttgcgcaccctaccctctct |
297 |
Q |
| |
|
||||||||||||||||||| | || |||||||||||||||||||||||||||| |
|
|
| T |
34457917 |
tttcgagcgctatttgtcacaacaggtttacctttgcgcaccctaccctctct |
34457865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 26389376 - 26389247
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctcatacaca |
100 |
Q |
| |
|
|||||||||||||||| ||||| || ||| |||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
26389376 |
tcacctgccacctccttatcctatgcctc-gtcctgcggctgataaaacattctatcctcctccatccgattatatccaacaaaaccctcctcatacaca |
26389278 |
T |
|
| Q |
101 |
gccttatcatgcgccgatgtcagatcaacca |
131 |
Q |
| |
|
| | ||||||||||| |||| ||||||||| |
|
|
| T |
26389277 |
acttcatcatgcgccggtgtcggatcaacca |
26389247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 31508158 - 31508307
Alignment:
| Q |
11 |
cctcctcatcctctgactcagtcctgcgg---ctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcctc---atacacagcct |
104 |
Q |
| |
|
||||||||||||||| ||| ||||||||| |||| |||||||| | |||||||||||||||||||||| |||||||||||| || |||| || | | |
|
|
| T |
31508158 |
cctcctcatcctctgcctc-gtcctgcggtggctgaaaaaacattctctcctcctccatccgatcatatccaacaaaaccctcatccgcatacccaacat |
31508256 |
T |
|
| Q |
105 |
tatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
||||||||| | |||| |||||||||||||||||| |||||||| ||||| |
|
|
| T |
31508257 |
aatcatgcgctggtgtcggatcaaccacctgggaggagtaatccacctgtg |
31508307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 4172676 - 4172601
Alignment:
| Q |
1 |
tcacctgccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||| |||||||||||||||||||| ||| ||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
4172676 |
tcacatgccacctcctcatcctctgcctc-gtcctgcagctgataaaacattatatcctcctccatccgatcatatc |
4172601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 32 - 77
Target Start/End: Complemental strand, 29900170 - 29900125
Alignment:
| Q |
32 |
tcctgcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||||||||| ||||||||| || |||||||||||||||||||||| |
|
|
| T |
29900170 |
tcctgcggctaataaaacatattctcctcctccatccgatcatatc |
29900125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0537 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: scaffold0537
Description:
Target: scaffold0537; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 915 - 1061
Alignment:
| Q |
9 |
cacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctc--ctcatacacagcctta |
106 |
Q |
| |
|
||||||||||||||||| |||| |||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||| || |||| |||| | | |
|
|
| T |
915 |
cacctcctcatcctctgcctca-tccttcggctgataaaacattatatcctcctccatccgatcatatccaacaaaaccctcatctgatac-cagcataa |
1012 |
T |
|
| Q |
107 |
tcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
|||||||| | |||| ||||||| |||||||||| |||||||| ||||| |
|
|
| T |
1013 |
tcatgcgctggtgtcggatcaactacctgggaggagtaatccacctgtg |
1061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0251 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0251
Description:
Target: scaffold0251; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 155
Target Start/End: Original strand, 748 - 897
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaaccctcct---catacacagcct |
104 |
Q |
| |
|
|||||||||||||||||| ||| ||| ||||||||||||||||| ||||||| |||||||||||||||| | ||||| |||| | ||||| |||| | |
|
|
| T |
748 |
ccacctcctcatcctctgcctc-gtcgtgcggctgataaaacatcctatcctcatccatccgatcatatccagcaaaagcctcatctgcatacccagcat |
846 |
T |
|
| Q |
105 |
tatcatgcgccgatgtcagatcaaccacctgggaggtgtaatccatctgtg |
155 |
Q |
| |
|
||||||||| | |||| ||||||||||| | ||| |||||||| ||||| |
|
|
| T |
847 |
aatcatgcgctggtgtcgaatcaaccacctagtaggagtaatccacctgtg |
897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 149
Target Start/End: Original strand, 27345 - 27488
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaa---ccctcctcatacacagcct |
104 |
Q |
| |
|
|||||||||||||||||| ||| || |||| ||||||||||||| ||||||| |||||||||||||||| | ||||| | ||| ||||| |||| | |
|
|
| T |
27345 |
ccacctcctcatcctctgcctc-gttctgcagctgataaaacatcctatcctcatccatccgatcatatccagcaaaagactcatccgcatacccagcat |
27443 |
T |
|
| Q |
105 |
tatcatgcgccgatgtcagatcaaccacctgggaggtgtaatcca |
149 |
Q |
| |
|
|||| | || | |||| |||||||||||||||||| |||||||| |
|
|
| T |
27444 |
aatcaagagctggtgtcggatcaaccacctgggaggagtaatcca |
27488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 45499 - 45356
Alignment:
| Q |
8 |
ccacctcctcatcctctgactcagtcctgcggctgataaaacattttatcctcctccatccgatcatatctaacaaaa---ccctcctcatacacagcct |
104 |
Q |
| |
|
|||||||||||||||||| ||| || |||| ||||||||||||| ||||||| |||||||||||||||| | ||||| | ||| ||||| |||| | |
|
|
| T |
45499 |
ccacctcctcatcctctgcctc-gttctgcagctgataaaacatcctatcctcatccatccgatcatatccagcaaaagactcatccgcatacccagcat |
45401 |
T |
|
| Q |
105 |
tatcatgcgccgatgtcagatcaaccacctgggaggtgtaatcca |
149 |
Q |
| |
|
|||| | || | |||| |||||||||||||||||| |||||||| |
|
|
| T |
45400 |
aatcaagagctggtgtcggatcaaccacctgggaggagtaatcca |
45356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0916 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0916
Description:
Target: scaffold0916; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 1365 - 1324
Alignment:
| Q |
36 |
gcggctgataaaacattttatcctcctccatccgatcatatc |
77 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1365 |
gcggctgataaaacatattatcctcctccatccgatcatatc |
1324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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