View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21649_high_1_N (Length: 754)
Name: NF21649_high_1_N
Description: NF21649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21649_high_1_N |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 599; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 599; E-Value: 0
Query Start/End: Original strand, 152 - 754
Target Start/End: Original strand, 39901926 - 39902528
Alignment:
| Q |
152 |
cgctaaattaatcacttaataatcgattctcaaacgcgcttccaaattcaattcacttcctctcttcaactgcgcttaacttcccgaagtgattattaga |
251 |
Q |
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| T |
39901926 |
cgctaaattaatcacttaataatcgattctcaaacgcgcttccaaattcaattcacttcctctcttcaactgcgcttaacttcccgaagtgattattaga |
39902025 |
T |
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| Q |
252 |
tctgaagcagatccaaatggaggaagcgttggaactcacacgcgccaaagacacaaaggaaaggatggctggtgtggagcgtctctaccatcttctagaa |
351 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902026 |
tctgaagcagatccaaatggaggaagcgttggaactcacacgcgccaaagacacaaaggaaaggatggctggtgtggagcgtctctaccatcttctagaa |
39902125 |
T |
|
| Q |
352 |
gcttctagaaagagtctttcatcttctgaagttacttcgcttgttgattcttgcatcgatctcttgaaggataacaatttccgtgtctctcaaggtgcac |
451 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902126 |
gcttctagaaagagtctttcatcttctgaagttacttcgcttgttgattcttgcatcgatctcttgaaggataacaatttccgtgtctctcaaggtgcac |
39902225 |
T |
|
| Q |
452 |
ttcagtctctcgcttccgccgccgttctctccggcgagcatttcaaacttcacttcaacgctcttcttcccgccgtcgttgatcgtctcggtgatgctaa |
551 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902226 |
ttcagtctctcgcttccgccgccgttctctccggcgagcatttcaaacttcacttcaacgctcttcttcccgccgtcgttgatcgtctcggtgatgctaa |
39902325 |
T |
|
| Q |
552 |
acaacctgttcgtgacgctgcgcgacgactacttctaacgctgatggaggtttcactttcactcttactttattaacctaatttgattttaattttaatc |
651 |
Q |
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| T |
39902326 |
acaacctgttcgtgacgctgcgcgacgactacttctaacgctgatggaggtttcactttcactcttactttattaacctaatttgattttaattttaatc |
39902425 |
T |
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| Q |
652 |
gaatttgaagtttagatggtagttacggtggaaaattgttattcataagttgagtgtattgaaagtttctaatgcagtaaaatttgttagagtatttgca |
751 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
39902426 |
gaatttgaagtttagatggtagttacggtggaaaattgttattcataagttgagtgtaatgaaagtttctaatgcagtaaaatttgttagagtatttgca |
39902525 |
T |
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| Q |
752 |
tga |
754 |
Q |
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| T |
39902526 |
tga |
39902528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 2e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 267 - 561
Target Start/End: Complemental strand, 29760167 - 29759873
Alignment:
| Q |
267 |
aatggaggaagcgttggaactcacacgcgccaaagacacaaaggaaaggatggctggtgtggagcgtctctaccatcttctagaagcttctagaaagagt |
366 |
Q |
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|||||||||||| ||||||| |||| || || ||| | |||||| | ||||| ||||| ||||||||| | || ||||||||||||||||||| | | |
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| T |
29760167 |
aatggaggaagcactggaactagcacgggcgaaggacgcgaaggaacgcatggcaggtgtagagcgtctccatcaagttctagaagcttctagaaaaact |
29760068 |
T |
|
| Q |
367 |
ctttcatcttctgaagttacttcgcttgttgattcttgcatcgatctcttgaaggataacaatttccgtgtctctcaaggtgcacttcagtctctcgctt |
466 |
Q |
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|| || | |||||| | || || || |||| |||| | ||||||||||||||||| | ||| || || || |||||||| ||||| || | |||| |
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| T |
29760067 |
ctaagttcaaccgaagtttcatcactcgtcgattgttgcttggatctcttgaaggataatagttttcgcgtttcgcaaggtgcgcttcaagctttggctt |
29759968 |
T |
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| Q |
467 |
ccgccgccgttctctccggcgagcatttcaaacttcacttcaacgctcttcttcccgccgtcgttgatcgtctcggtgatgctaaacaacctgtt |
561 |
Q |
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|||| | |||||||||||||| ||||| || ||||| ||||| || ||| |||| || || |||||||| | ||||||| ||||||||||||| |
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| T |
29759967 |
ccgctgttgttctctccggcgatcattttaagcttcatttcaatgcgcttgttccggcggttgttgatcggttaggtgatggtaaacaacctgtt |
29759873 |
T |
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