View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21649_high_5 (Length: 370)
Name: NF21649_high_5
Description: NF21649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21649_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 10 - 360
Target Start/End: Original strand, 12341816 - 12342181
Alignment:
| Q |
10 |
ctaacaagattttccaaattttctctttcatgcgtgccttgccaaccaatgtcattcccatcattgtcttttaaacttaatga---taccataatagttt |
106 |
Q |
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| T |
12341816 |
ctaacaagattttccaaattttctctttcatccttgccttgccaactaatgttattctcatcattgtcttttaaacttgatgatgataccataatggttt |
12341915 |
T |
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| Q |
107 |
aactttgaagttgtaattattgatgatcccaatggtttggtaatattatgtatcgagatttgtaggttttaatgaaaggaaaatatttactattgtaagt |
206 |
Q |
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| T |
12341916 |
aacttcgaagttgtaattattggtgatcccaatggtttggtaatattatgtatcgatatttgtaggttttaatgaaaggaaaatatttactattgtaagt |
12342015 |
T |
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| Q |
207 |
gtattacatatgacaaaactctatttttagtgccccacnnnnnnnnttgaattaattgtatttagtctataacaaaag-------------taagaaatt |
293 |
Q |
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|||||||||||||||||| |||||||||||||| || | ||||| ||||||||||||||||||||| ||||||||| |
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| T |
12342016 |
gtattacatatgacaaaattctatttttagtgcaccgcaaaaaaaa-aaaattatcggtatttagtctataacaaaagtgaaagtattctctaagaaatt |
12342114 |
T |
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| Q |
294 |
aacaaaatgtaattttggtagttttttgaaggaagaagaaaatggaaagaaagaaggaccaaattgt |
360 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12342115 |
aacagaatgtaattttggtagttttttgaaggaagaagaaaatggaaagaaagaaggaccaacttgt |
12342181 |
T |
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