View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21649_high_9 (Length: 328)

Name: NF21649_high_9
Description: NF21649
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21649_high_9
NF21649_high_9
[»] chr4 (6 HSPs)
chr4 (199-254)||(15562160-15562215)
chr4 (195-254)||(43365841-43365900)
chr4 (195-254)||(44363351-44363410)
chr4 (195-229)||(12499057-12499091)
chr4 (89-117)||(14015925-14015953)
chr4 (195-251)||(51871618-51871674)
[»] chr8 (3 HSPs)
chr8 (195-272)||(32089237-32089315)
chr8 (190-228)||(20771462-20771500)
chr8 (190-228)||(20781256-20781294)
[»] chr6 (2 HSPs)
chr6 (195-230)||(10244541-10244576)
chr6 (194-226)||(28587657-28587689)
[»] chr7 (4 HSPs)
chr7 (196-229)||(44858069-44858102)
chr7 (190-229)||(23416137-23416175)
chr7 (195-229)||(27567859-27567893)
chr7 (204-272)||(45871759-45871828)
[»] chr5 (2 HSPs)
chr5 (195-228)||(3577779-3577812)
chr5 (195-228)||(14626244-14626277)
[»] chr1 (2 HSPs)
chr1 (201-254)||(26767667-26767720)
chr1 (196-229)||(42508298-42508331)
[»] chr3 (1 HSPs)
chr3 (195-227)||(39450662-39450694)
[»] scaffold0157 (1 HSPs)
scaffold0157 (195-229)||(21386-21420)
[»] chr2 (3 HSPs)
chr2 (195-227)||(964093-964125)
chr2 (195-227)||(40609912-40609944)
chr2 (197-229)||(42006401-42006433)


Alignment Details
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 15562160 - 15562215
Alignment:
Q  199 tccccctattttaaaatttgacagttttggtttttctatataataatttgtctaaa 254  Q
    |||||||||||||||||||||||||||||||   ||||| ||||||||||||||||    
T  15562160 tccccctattttaaaatttgacagttttggtccctctatctaataatttgtctaaa 15562215  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 254
Target Start/End: Original strand, 43365841 - 43365900
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggtttttctatataataatttgtctaaa 254  Q
    ||||||| | |||||||||||| |||||||||||||  ||||| ||||| ||||||||||    
T  43365841 ttggtcctcatattttaaaattcgacagttttggttcctctatctaatattttgtctaaa 43365900  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 44363410 - 44363351
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggtttttctatataataatttgtctaaa 254  Q
    |||||||||||||||||||||| |||| |||||||   |||||| |||| ||||||||||    
T  44363410 ttggtccccctattttaaaattcgacaattttggtccctctataaaatattttgtctaaa 44363351  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Original strand, 12499057 - 12499091
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggt 229  Q
    |||||||||||||||||||||| ||||||||||||    
T  12499057 ttggtccccctattttaaaattcgacagttttggt 12499091  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 117
Target Start/End: Original strand, 14015925 - 14015953
Alignment:
Q  89 caagagaattgaagctacttgctgaacat 117  Q
    |||||||||||||||||||||||||||||    
T  14015925 caagagaattgaagctacttgctgaacat 14015953  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 251
Target Start/End: Original strand, 51871618 - 51871674
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggtttttctatataataatttgtct 251  Q
    |||||| || |||||||||||||||||| ||| || | ||||| |||||||||||||    
T  51871618 ttggtctccgtattttaaaatttgacagctttagtctctctatctaataatttgtct 51871674  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 32089315 - 32089237
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggtttttctatataataatttgtc-taaagaaggtgatataacatgt 272  Q
    |||||||||||||||| || || |||||||||||| | ||||| |||||||||||| |||| | |||||||||||||||    
T  32089315 ttggtccccctattttgaagttcgacagttttggtctctctatctaataatttgtcttaaatatggtgatataacatgt 32089237  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 20771462 - 20771500
Alignment:
Q  190 cagttttggtccccctattttaaaatttgacagttttgg 228  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  20771462 cagttttggtccccctattttaaaagttgacaattttgg 20771500  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 190 - 228
Target Start/End: Original strand, 20781256 - 20781294
Alignment:
Q  190 cagttttggtccccctattttaaaatttgacagttttgg 228  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  20781256 cagttttggtccccctattttaaaagttgacaattttgg 20781294  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 230
Target Start/End: Complemental strand, 10244576 - 10244541
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggtt 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  10244576 ttggtccccctattttaaaatttgacagttttggtt 10244541  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 28587657 - 28587689
Alignment:
Q  194 tttggtccccctattttaaaatttgacagtttt 226  Q
    ||||||||||||||||||||||| |||||||||    
T  28587657 tttggtccccctattttaaaattcgacagtttt 28587689  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 44858102 - 44858069
Alignment:
Q  196 tggtccccctattttaaaatttgacagttttggt 229  Q
    ||||||||||||||||||||||||||||||||||    
T  44858102 tggtccccctattttaaaatttgacagttttggt 44858069  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 23416175 - 23416137
Alignment:
Q  190 cagttttggtccccctattttaaaatttgacagttttggt 229  Q
    |||||||||||||| |||||||||||||||||||||||||    
T  23416175 cagttttggtcccc-tattttaaaatttgacagttttggt 23416137  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 27567893 - 27567859
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggt 229  Q
    |||||||||||||||||||||| ||||||||||||    
T  27567893 ttggtccccctattttaaaattcgacagttttggt 27567859  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 204 - 272
Target Start/End: Original strand, 45871759 - 45871828
Alignment:
Q  204 ctattttaaaatttgacagttttggtttttctatataataatttgtct-aaagaaggtgatataacatgt 272  Q
    |||||||||||||  |||||||||||   ||||||||||| ||||||| ||| | |||||||||||||||    
T  45871759 ctattttaaaattcaacagttttggtccctctatataatattttgtctaaaatatggtgatataacatgt 45871828  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 195 - 228
Target Start/End: Complemental strand, 3577812 - 3577779
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttgg 228  Q
    ||||||||||||||||||||||||||||||||||    
T  3577812 ttggtccccctattttaaaatttgacagttttgg 3577779  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 14626244 - 14626277
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttgg 228  Q
    ||||||| ||||||||||||||||||||||||||    
T  14626244 ttggtcctcctattttaaaatttgacagttttgg 14626277  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 201 - 254
Target Start/End: Original strand, 26767667 - 26767720
Alignment:
Q  201 cccctattttaaaatttgacagttttggtttttctatataataatttgtctaaa 254  Q
    |||||||||||||||||||||||||||||   ||||||| ||| ||||||||||    
T  26767667 cccctattttaaaatttgacagttttggtccctctatattatattttgtctaaa 26767720  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 42508298 - 42508331
Alignment:
Q  196 tggtccccctattttaaaatttgacagttttggt 229  Q
    ||||||||||||||||||||| ||||||||||||    
T  42508298 tggtccccctattttaaaattcgacagttttggt 42508331  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 39450662 - 39450694
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttg 227  Q
    |||||||||||||||||||||||||||||||||    
T  39450662 ttggtccccctattttaaaatttgacagttttg 39450694  T

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Target: scaffold0157 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 229
Target Start/End: Complemental strand, 21420 - 21386
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttggt 229  Q
    |||||||||||||||||||||| ||||||||||||    
T  21420 ttggtccccctattttaaaattcgacagttttggt 21386  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 964125 - 964093
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttg 227  Q
    |||||||||||||||||||||| ||||||||||    
T  964125 ttggtccccctattttaaaattcgacagttttg 964093  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 40609944 - 40609912
Alignment:
Q  195 ttggtccccctattttaaaatttgacagttttg 227  Q
    ||||||||||||||||||||||||| |||||||    
T  40609944 ttggtccccctattttaaaatttgagagttttg 40609912  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 42006401 - 42006433
Alignment:
Q  197 ggtccccctattttaaaatttgacagttttggt 229  Q
    ||||| |||||||||||||||||||||||||||    
T  42006401 ggtcctcctattttaaaatttgacagttttggt 42006433  T

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