View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2164_low_1 (Length: 446)

Name: NF2164_low_1
Description: NF2164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2164_low_1
NF2164_low_1
[»] chr3 (1 HSPs)
chr3 (16-441)||(9160043-9160468)
[»] chr1 (21 HSPs)
chr1 (16-433)||(9317529-9317949)
chr1 (16-309)||(9320353-9320646)
chr1 (16-309)||(9350670-9350963)
chr1 (16-309)||(9254394-9254687)
chr1 (278-397)||(9348497-9348616)
chr1 (16-210)||(8942468-8942668)
chr1 (15-210)||(9453286-9453484)
chr1 (15-106)||(9000113-9000204)
chr1 (76-210)||(9400146-9400280)
chr1 (16-198)||(8873545-8873727)
chr1 (56-210)||(8932598-8932752)
chr1 (20-94)||(8964967-8965041)
chr1 (16-94)||(9057012-9057090)
chr1 (16-94)||(9082120-9082198)
chr1 (20-94)||(9104572-9104646)
chr1 (76-210)||(9485651-9485785)
chr1 (16-106)||(9142440-9142530)
chr1 (137-210)||(8956601-8956674)
chr1 (16-60)||(8921147-8921191)
chr1 (137-199)||(8921274-8921336)
chr1 (16-94)||(9096390-9096468)
[»] chr6 (1 HSPs)
chr6 (16-385)||(15926486-15926855)


Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 16 - 441
Target Start/End: Original strand, 9160043 - 9160468
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 115  Q
    |||||||||||| |||||||| ||| |||| || ||||| |||||||||||||| |||||||||||||||||||| ||||||| ||||||  |||| |||    
T  9160043 tattcttcctatagttgcaacctcactaatgaaatcttgtccattacccttagacttacccaacatctttatggcaacaaatgcaccacttcttaacttt 9160142  T
Q  116 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcatcaagg 215  Q
    |||||||||||| |||| |||||||||||||| |||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||    
T  9160143 cctttataaacagaaccaaaccctccttcacccaacttgtccttaaaacttttagtcatcttctttatatctttgtatgaatacctgattggcatcaagg 9160242  T
Q  216 tacttccacgaagaaaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggccaagcat 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9160243 tacttccacgaagaaaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcctagcat 9160342  T
Q  316 aaatctcattataaatgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaactttggataaatcaaaggctcca 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9160343 aaatctcattataaatgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaactttggataaatcaaaggctcca 9160442  T
Q  416 cctaataattccgaacttcttctcac 441  Q
    ||||||||| | ||||||||| ||||    
T  9160443 cctaataatactgaacttcttttcac 9160468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 433
Target Start/End: Complemental strand, 9317949 - 9317529
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9317949 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 9317850  T
Q  116 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcatcaagg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  9317849 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacctgattggcatcatgg 9317750  T
Q  216 tacttccacgaagaaaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggccaagcat 315  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||   | |    
T  9317749 tacttccacgaagaaaaacttcaatattttcgtaaattgaggcatgttttcttcgacatgtatatatcaatagcacaaagaaaactacaaggcccgtcgt 9317650  T
Q  316 aaatctcattataaatgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaatcagaaact---ttggataaatcaaaggct 412  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||||||| |||||||||||| ||||||||||||   ||||||||||||||  ||    
T  9317649 aaatctcattaccaatgatggcaagatataccttccacttattcttcctaatttaatggcaattttggaatcagaaactttgttggataaatcaaattct 9317550  T
Q  413 ccacctaataattccgaactt 433  Q
    ||||||  |||||| ||||||    
T  9317549 ccacctgctaattctgaactt 9317529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 9320353 - 9320646
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 115  Q
    |||||||||||||||||| |||||| |||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||   ||  |||    
T  9320353 tattcttcctatggttgcgacttcactaatgaaatcttgtccattacccttagatttacccaacatctttatggccacaaatggcccgctgcatagcttt 9320452  T
Q  116 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcatcaagg 215  Q
    ||||||||||||   || || ||||||||||| |||||| | |||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||| |    
T  9320453 cctttataaacagctccaaagcctccttcacccaacttgtctttaaaacttcgagtcatcttctttatttctttgtatgaatacctaattggcatcaaag 9320552  T
Q  216 tacttccacgaagaaaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcc 309  Q
    |||| ||  |||||||||||||||||| ||| ||   |||  |||||||||| | ||| |||||||||||||||||||||||||| | ||||||    
T  9320553 tactcccttgaagaaaaacttcaatatcttcatacattgatatatgtcttctccgacaagtatatatcaatagcacaaagaaaaccagaaggcc 9320646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 9350670 - 9350963
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 115  Q
    |||||||||||||||||| |||||| |||| || ||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||   ||  |||    
T  9350670 tattcttcctatggttgcgacttcactaatgaaatcttgtccattacccttagatttacccaacatctttatggccacaaatggcccgctgcatagcttt 9350769  T
Q  116 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcatcaagg 215  Q
    ||||||||||||   || || ||||||||||| |||||| |  ||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||| |    
T  9350770 cctttataaacagttccaaagcctccttcacccaacttgtctctaaaacttcgagtcatcttctttatttctttgtatgaatacctaattggcatcaaag 9350869  T
Q  216 tacttccacgaagaaaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcc 309  Q
    |||| ||  |||||||||||||||||| ||| ||   |||  |||||||||| | ||| ||||||||||| |||||||||||||| | ||||||    
T  9350870 tactcccttgaagaaaaacttcaatatcttcatatattgatatatgtcttctccgacaagtatatatcaacagcacaaagaaaaccagaaggcc 9350963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 9254687 - 9254394
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 115  Q
    |||||||||||||||||| |||||| |||| || || || |||||||||||||| ||| |||||||||||||||| |||||||| |||||   ||  |||    
T  9254687 tattcttcctatggttgcgacttcactaatgaaatcatgtccattacccttagatttaaccaacatctttatggcaacaaatggcccactgcgtagcttt 9254588  T
Q  116 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcatcaagg 215  Q
    |||||| ||||    || || ||||||||||| |||||| |  ||||| ||| ||||||||||||||| |||||||| |||||| | ||||| ||||  |    
T  9254587 cctttaaaaacggctccaaagcctccttcacccaacttgtctctaaaatttcgagtcatcttctttatttctttgtaagaatacctaattggaatcagag 9254488  T
Q  216 tacttccacgaagaaaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaactacaaggcc 309  Q
    |||| ||  |||||||||||||||||| ||| ||   |||  |||||||||| | ||| |||||||||||||||||||||||||| | ||||||    
T  9254487 tactcccttgaagaaaaacttcaatatcttcatacattgatatatgtcttctccgacaagtatatatcaatagcacaaagaaaaccagaaggcc 9254394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 278 - 397
Target Start/End: Complemental strand, 9348616 - 9348497
Alignment:
Q  278 tatatcaatagcacaaagaaaactacaaggccaagcataaatctcattataaatgatggcaagagataccttccacttattcttcctaattcaatggcaa 377  Q
    ||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| |||| |||    
T  9348616 tatatcaattgcacaaagaaaactacaaggcctaccataaatctcattataaatgatggcaagagataccttgcacttgttcttccgaattgaatgccaa 9348517  T
Q  378 ttttagaatcagaaactttg 397  Q
    || |||||||||||||||||    
T  9348516 ttctagaatcagaaactttg 9348497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 8942468 - 8942668
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattaccctta-----gagtt-acccaacatctttatggccacaaatggaccactaatt 109  Q
    |||||||||||| |||||||||||||| || || ||||||||||| ||||||     | ||| |||||||||||||||||| ||  |||| |||||   |    
T  8942468 tattcttcctattgttgcaacttcattgatgaaatcttgcccatttcccttacccttgtgtttacccaacatctttatggctaccgatggcccactgcgt 8942567  T
Q  110 aaatttcctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggca 209  Q
    |  ||||| ||||||||   |||  | ||||||||||| |||||| |||||||||   ||||||| |||||||| ||| ||||||||||| | |||||||    
T  8942568 agctttcccttataaaccttaccatagcctccttcacccaacttgtccttaaaaccattagtcattttctttatctctgtgtatgaatacctaattggca 8942667  T
Q  210 t 210  Q
    |    
T  8942668 t 8942668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 9453484 - 9453286
Alignment:
Q  15 atattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacc---caacatctttatggccacaaatggaccactaattaa 111  Q
    ||||||| |||||||||||||||||| | || || ||||||||||||   || || |||     ||||||||||||||| | |||||||||||| ||||     
T  9453484 atattctccctatggttgcaacttcacttatgaaatcttgcccattagtttttgatttaattttcaacatctttatggctataaatggaccacttattag 9453385  T
Q  112 atttcctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcat 210  Q
    |||||||||||| |||   ||  | ||||||||||| || || ||||| |||| | | | ||||| |||||| ||||||||||||||| | ||||||||    
T  9453384 atttcctttatacacatctccataacctccttcacccaattttaccttgaaaccttttgccatctgctttatctctttgtatgaataccttattggcat 9453286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 15 - 106
Target Start/End: Original strand, 9000113 - 9000204
Alignment:
Q  15 atattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccacta 106  Q
    |||||||||| |||||||  |||||| ||||||| |||| ||||||||| || || ||||||||||||||||| |||||| | |||||||||    
T  9000113 atattcttccgatggttgagacttcactaataaaatctttcccattacctttcgatttacccaacatctttattgccacacaaggaccacta 9000204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 210
Target Start/End: Original strand, 9400146 - 9400280
Alignment:
Q  76 caacatctttatggccacaaatggaccactaattaaatttcctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatc 175  Q
    ||||||||||||||| |||||||| ||||| |||| ||||||| |||| |||   ||  | ||||||||||| || || ||||| ||| || | ||||||    
T  9400146 caacatctttatggctacaaatggcccacttattagatttcctctatacacatctccataacctccttcacccaattttaccttgaaattttttgtcatc 9400245  T
Q  176 ttctttatatctttgtatgaatacttgattggcat 210  Q
    | |||||| ||||||||||||||| | ||||||||    
T  9400246 tgctttatctctttgtatgaataccttattggcat 9400280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 198
Target Start/End: Complemental strand, 8873727 - 8873545
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 115  Q
    |||||| || |||||||| |||||| | ||||||||| |||| ||||| || || |||||||||||||| || |||||| | ||||| |||  ||  |||    
T  8873727 tattctcccaatggttgctacttcacttataaagtctcgcccgttaccttttgatttacccaacatcttgattgccacacaaggaccgctacgtagtttt 8873628  T
Q  116 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaata 198  Q
    || ||| | |||   || || |||||||||||||| ||| | || |||| ||||| ||| ||||| || ||||||||||||||    
T  8873627 cccttaaacacagtgccaaagcctccttcacctaatttgtctttgaaacctctagccattttcttaatttctttgtatgaata 8873545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 56 - 210
Target Start/End: Original strand, 8932598 - 8932752
Alignment:
Q  56 ccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaatttcctttataaacacaaccgaaccctccttcacctaacttga 155  Q
    ||||||||||||   || ||||||||||||||||| || || || ||||||   |  ||||| ||||||||   |||  | ||||||||||| |||||      
T  8932598 ccattacccttaagtttgcccaacatctttatggctaccaaaggcccactacgaagctttcccttataaaccttaccatatcctccttcacccaactttt 8932697  T
Q  156 ccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcat 210  Q
    ||||||| |||||||||||||  ||||| ||||||||||||||| | ||||||||    
T  8932698 ccttaaagcttctagtcatctgttttatctctttgtatgaatacctaattggcat 8932752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 8964967 - 8965041
Alignment:
Q  20 cttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 94  Q
    ||||| |||||||| ||||||||||||||||| ||||||||||| || || ||||| |||||||| || ||||||    
T  8964967 cttccaatggttgctacttcattaataaagtcctgcccattaccttttgatttacctaacatcttgattgccaca 8965041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 9057012 - 9057090
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 94  Q
    ||||||||| || ||||  |||||||| |||||||||||||||||||| || || || |||||||||||||| ||||||    
T  9057012 tattcttccaatagttgtgacttcattgataaagtcttgcccattacctttggacttgcccaacatctttattgccaca 9057090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 9082198 - 9082120
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 94  Q
    ||||||||| || ||||  |||||||| |||||||||||||||||||| || || |||||||||||||| || ||||||    
T  9082198 tattcttccaatagttgtgacttcattgataaagtcttgcccattaccttttgacttacccaacatcttgattgccaca 9082120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 9104646 - 9104572
Alignment:
Q  20 cttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 94  Q
    ||||| |||||||| |||||| ||||||||||||| |||||||| || || |||||||||||||| || ||||||    
T  9104646 cttccaatggttgctacttcactaataaagtcttgtccattacctttcgacttacccaacatcttgattgccaca 9104572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 76 - 210
Target Start/End: Complemental strand, 9485785 - 9485651
Alignment:
Q  76 caacatctttatggccacaaatggaccactaattaaatttcctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatc 175  Q
    ||||||||||||||| |||||||| ||||| |||| ||||||| |||| |||   ||  | ||||||||||| || || || || ||| || | ||||||    
T  9485785 caacatctttatggctacaaatggcccacttattagatttcctctatacacatctccataacctccttcacccaattttactttgaaattttttgtcatc 9485686  T
Q  176 ttctttatatctttgtatgaatacttgattggcat 210  Q
    | |||||| ||||||||||||||| | ||||||||    
T  9485685 tgctttatctctttgtatgaataccttattggcat 9485651  T

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Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 9142530 - 9142440
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccacta 106  Q
    ||||||||| |||||   ||||||| ||||||| |||||||||||||| || || ||||||| |||||| || |||||| | |||||||||    
T  9142530 tattcttccgatggtcataacttcactaataaaatcttgcccattaccttttgacttacccagcatcttgattgccacacaaggaccacta 9142440  T

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Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 137 - 210
Target Start/End: Original strand, 8956601 - 8956674
Alignment:
Q  137 cctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcat 210  Q
    ||||||||||| |||||  ||||||| | ||| ||||||| |||||| ||||||||||||||| | ||||||||    
T  8956601 cctccttcacccaacttttccttaaagcctctcgtcatctgctttatctctttgtatgaatacctaattggcat 8956674  T

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Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 60
Target Start/End: Original strand, 8921147 - 8921191
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccatt 60  Q
    |||| ||||||||||||||||||||||||| || |||||||||||    
T  8921147 tatttttcctatggttgcaacttcattaatgaaatcttgcccatt 8921191  T

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Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 8921274 - 8921336
Alignment:
Q  137 cctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatac 199  Q
    ||||||||||| |||||  | ||||| | ||| |||||||||||||| |||||||||||||||    
T  8921274 cctccttcacccaacttttcgttaaagcctctcgtcatcttctttatctctttgtatgaatac 8921336  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 16 - 94
Target Start/End: Complemental strand, 9096468 - 9096390
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccaca 94  Q
    ||||||||| || ||||  |||||||| ||||| |||||||||||||| || || |||||||||| ||| || ||||||    
T  9096468 tattcttccaatagttgtgacttcatttataaaatcttgcccattaccttttgaattacccaacaacttgattgccaca 9096390  T

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Target: chr6 (Bit Score: 151; Significance: 1e-79; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 16 - 385
Target Start/End: Complemental strand, 15926855 - 15926486
Alignment:
Q  16 tattcttcctatggttgcaacttcattaataaagtcttgcccattacccttagagttacccaacatctttatggccacaaatggaccactaattaaattt 115  Q
    |||||||||||||||||| |||||||||||||| ||||| ||||| | |||||| ||||||||||||||||||||||||||||| || ||   ||  |||    
T  15926855 tattcttcctatggttgccacttcattaataaaatcttgtccattgctcttagatttacccaacatctttatggccacaaatggcccgctgcatagcttt 15926756  T
Q  116 cctttataaacacaaccgaaccctccttcacctaacttgaccttaaaacttctagtcatcttctttatatctttgtatgaatacttgattggcatcaagg 215  Q
    ||||||||||||  ||| || || |||||||| |||||| |  | |||| |||||||||||| ||||| ||||||||||||||| | |||||||||||||    
T  15926755 cctttataaacagcaccaaaaccaccttcacccaacttgtctctgaaacctctagtcatcttttttatttctttgtatgaataccttattggcatcaagg 15926656  T
Q  216 tacttccacgaagaaaaacttcaatattttcgtaagctgaggtatgtcttcttctacatgtatatatcaatagcacaaagaaaacta-caaggccaagca 314  Q
    |||||||||||||||||||||||||||||||||||  |||| ||||||| |||| |||||||||||||||||| ||||||||||| |  ||  ||||  |    
T  15926655 tacttccacgaagaaaaacttcaatattttcgtaaattgagttatgtctgcttcgacatgtatatatcaatagaacaaagaaaacaatgaatcccaatga 15926556  T
Q  315 taaatctcattataaatgatggcaagagataccttccacttattcttcctaattcaatggcaattttagaa 385  Q
     |||||||| ||||| ||||||||||| ||| |||||  | | ||||||||  |||||| |||||||||||    
T  15926555 -aaatctcactataagtgatggcaagatatatcttcctgtgactcttcctatctcaatgccaattttagaa 15926486  T

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