View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2164_low_2 (Length: 429)
Name: NF2164_low_2
Description: NF2164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2164_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 365; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 411
Target Start/End: Original strand, 43485891 - 43486279
Alignment:
| Q |
23 |
catcatcctgcgtaggtggcatatgagcgcaagtgaagaaattgttatgattgtggttgttgctgcggtgacgtttccctattgggaaaaagtgatgagg |
122 |
Q |
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|||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43485891 |
catcgtcctgcgtaggtggcgtatgagcgcaagtgaagaaattgttgtgattgtggttgttgctgcggtgacgtttccctattgggaaaaagtgatgagg |
43485990 |
T |
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| Q |
123 |
agtgttactgcagctgaattcatactcccttgatgcggtaaattggtggcgtgagtcgtgagagcggcttgaggaggagctgccgtggctgtgatggtgg |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
43485991 |
agtgttactgcagctgaattcatactcccttgatgcggtaaattggtggcgtgagtcgtgagagcggcttgaggaggagctgtggtggctgtgatggtgg |
43486090 |
T |
|
| Q |
223 |
aacattagattggcaatggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctca |
322 |
Q |
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| T |
43486091 |
aacattagattggcaatggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctca |
43486190 |
T |
|
| Q |
323 |
acatgaagaaggctacacgtaccatactccacactctctttgatatcactggtagattgttttccatttttaattttatatagaaattg |
411 |
Q |
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| T |
43486191 |
acatgaagaaggctacacgtaccatactccacactctctttgatatcactggtagattgttttccattttttattttatatagaaattg |
43486279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 78 - 393
Target Start/End: Original strand, 43475330 - 43475642
Alignment:
| Q |
78 |
gttgttgctgcggtgacgtttccctattgggaaaaagtgatgaggagtgttactgcagctgaattcatactcccttgatgcggtaaattggtggcgtgag |
177 |
Q |
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| T |
43475330 |
gttgtggctacggtgacgcttcccaattgggaagaagtggttgggagtgttgctacagctgaattcgtactcccttgaggcggtgaattggtggtgtgag |
43475429 |
T |
|
| Q |
178 |
tcgtgagagcggcttgaggaggagctgccgtggctgtg---atggtggaacattagattggcaatggcttttccggcaagcttgctgcggcgtttgagca |
274 |
Q |
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| T |
43475430 |
-cg-----gcggcttgaggtggagccaccgtggttgtggtgatggtggaacattagattggcaatggcttttccggcgagcttgctgcggcgtttgagca |
43475523 |
T |
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| Q |
275 |
tcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggctacacgtaccatactccacactctctttgatatcactgg |
374 |
Q |
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| T |
43475524 |
tcatgtttaggcccatcattagtttgccctttgacataccttttctcaacatgaagaaggccacacgtaccatactccacactttctttgatatcactgg |
43475623 |
T |
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| Q |
375 |
tagattgttttccattttt |
393 |
Q |
| |
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||||||||||||||||||| |
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| T |
43475624 |
tagattgttttccattttt |
43475642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 4359118 - 4359242
Alignment:
| Q |
238 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggcta |
337 |
Q |
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|||||||||||||| ||||||| ||||||||| | ||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||| ||||| | |
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| T |
4359118 |
atggcttttccggcgagcttgccgcggcgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaggcca |
4359217 |
T |
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| Q |
338 |
cacgtaccatactccacactctctt |
362 |
Q |
| |
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|||||| ||||||||| |||||||| |
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| T |
4359218 |
cacgtatcatactccatactctctt |
4359242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 238 - 392
Target Start/End: Complemental strand, 4349766 - 4349612
Alignment:
| Q |
238 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggcta |
337 |
Q |
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|||||||||||||| ||||||| |||| |||| | ||||||||| ||| ||||||| |||||||||||||| ||||||||||| |||||||| || || | |
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| T |
4349766 |
atggcttttccggcgagcttgccgcggtgtttaaccatcatgttgaggtccatcattagttttccctttgatatgccttttcttaacatgaacaaagcca |
4349667 |
T |
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| Q |
338 |
cacgtaccatactccacactctctttgatatcactggtagattgttttccatttt |
392 |
Q |
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|||||| ||||||||| |||||||| | ||| | ||||| |||||||||||||| |
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| T |
4349666 |
cacgtatcatactccatactctcttggttattattggtacgttgttttccatttt |
4349612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 238 - 392
Target Start/End: Complemental strand, 4353152 - 4352999
Alignment:
| Q |
238 |
atggcttttccggcaagcttgctgcggcgtttgagcatcatgtttaggcccatcatcagttttccctttgaaatgccttttctcaacatgaagaaggcta |
337 |
Q |
| |
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|||||||||||||||||||| || |||||||||| ||||||||| ||| ||||||| |||||||||||||| || |||||||| |||||||| || || | |
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| T |
4353152 |
atggcttttccggcaagctt-ctacggcgtttgaccatcatgttgaggtccatcattagttttccctttgatataccttttcttaacatgaacaaagcca |
4353054 |
T |
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| Q |
338 |
cacgtaccatactccacactctctttgatatcactggtagattgttttccatttt |
392 |
Q |
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|||||| ||||||||| |||||||| | ||| | ||||| |||||||||||||| |
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| T |
4353053 |
cacgtatcatactccatactctcttggttattattggtacgttgttttccatttt |
4352999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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