View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2164_low_4 (Length: 293)
Name: NF2164_low_4
Description: NF2164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2164_low_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 19 - 283
Target Start/End: Complemental strand, 7330074 - 7329810
Alignment:
| Q |
19 |
gctccatcattctcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcaatgnnnnnnnnnnnnnctagaacataaacaca |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
7330074 |
gctccatcattctcaagttcaggttgtagatctacaattcaaaatgaacccatttaaacaatatatcgatgaaaaacgaaaaaactagaacataaacaca |
7329975 |
T |
|
| Q |
119 |
aagtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagatatgta |
218 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7329974 |
aagtaaatgatgtgaagtgtttcatcattctcaagtttatagcatcttataatatgccaacaagttgcaaactgtagtgcttggaactatcagatatgta |
7329875 |
T |
|
| Q |
219 |
ctgcagtggtaatttcataatagagttttcctcattctcaagtttccaaagctcatttcattcat |
283 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7329874 |
ctgcagtggtaatttcctaatagagttttcctcattctcaagtttccaaagttcatttcattcat |
7329810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 37 - 81
Target Start/End: Original strand, 7309913 - 7309957
Alignment:
| Q |
37 |
tcaggttgtagatctacaattcaaaatgaacccatttaaacaata |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| ||||||| |
|
|
| T |
7309913 |
tcaggttgtagatctacaattcaaaatgaaccaatttcaacaata |
7309957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 120 - 213
Target Start/End: Original strand, 7309996 - 7310079
Alignment:
| Q |
120 |
agtaaatgatgtgaagtgtttcattattctcaagtttatagcatcttataacatgccaacaagttgcaaactgtagtgcttggaactatcagat |
213 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||| | |||||||||||| |||| ||||||||||||||| ||||||| |
|
|
| T |
7309996 |
agtaaatcatgtgaagtgtttcattattctcaagattatag----------cctgccaacaagttacaaaatgtagtgcttggaacaatcagat |
7310079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 232 - 279
Target Start/End: Original strand, 22482274 - 22482321
Alignment:
| Q |
232 |
ttcataatagagttttcctcattctcaagtttccaaagctcatttcat |
279 |
Q |
| |
|
|||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
22482274 |
ttcataatagagttttcccgattcttaactttccaaagctcatttcat |
22482321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University