View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2164_low_5 (Length: 267)
Name: NF2164_low_5
Description: NF2164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2164_low_5 |
 | |
|
| [»] scaffold0176 (2 HSPs) |
| | |
|
| [»] scaffold0289 (1 HSPs) |
| | |
|
| [»] scaffold0085 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 52673288 - 52673147
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
52673288 |
tttgtgtctatctctctcttaccaacatattctctctcatcaaaataatttattttaattattcattcatcattctctctcatctaaaatgaacctatgt |
52673189 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttcccg |
156 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52673188 |
caccaatgacaccaaaaaactatggcacccaagtatttcccg |
52673147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 17 - 153
Target Start/End: Complemental strand, 46079432 - 46079292
Alignment:
| Q |
17 |
catttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttat |
112 |
Q |
| |
|
||||||| ||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||| |
|
|
| T |
46079432 |
catttgtgtctatctgtctcttaacaactcattctctctcatctaaataatttattttaatcattcattgatcattctctctcatctaaaatgaacctat |
46079333 |
T |
|
| Q |
113 |
gttaccaatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
|| | ||||| ||||||||||||||| || ||||||||||| |
|
|
| T |
46079332 |
gtcatcaatggcaccaaaaaactatgtcatccaagtatttc |
46079292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 29544252 - 29544114
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgt |
114 |
Q |
| |
|
||||| ||||||||||| || |||| |||||| ||||||||||||||||||||||||||||||| | |||| ||||||| |||||||| ||||| |
|
|
| T |
29544252 |
tttgtgtctatctctctattaacaactcattctctatcatctaaataatttattttaatcattcatttatcattttctctcatctaaaatgaacatatgt |
29544153 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||| |
|
|
| T |
29544152 |
caccaatggcaccaaaaaactatgacacccaagtatttc |
29544114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 97
Target Start/End: Complemental strand, 1208745 - 1208706
Alignment:
| Q |
58 |
tctaaataatttattttaatcattcattcaccattctctc |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
1208745 |
tctaaataatttattttaatcattcattcatcattctctc |
1208706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 30643654 - 30643603
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctct |
98 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || |||| ||||| |
|
|
| T |
30643654 |
attctctctcatctaaataatttattttaatcattcatccatcattatctct |
30643603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 31455954 - 31455907
Alignment:
| Q |
49 |
tctcgctcatctaaataatttattttaatcattcattcaccattctct |
96 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31455954 |
tctctctcatctaaataatttattttaatcattcattcttcattctct |
31455907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 51853502 - 51853548
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||| |||||||||||| |
|
|
| T |
51853502 |
ctcatctaaataagttattttaattattcattcaacattctctctca |
51853548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 5052117 - 5052170
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||| ||| | |||||||||||| |
|
|
| T |
5052117 |
attctctctcatcaaaataatttattttaatcatttatttatcattctctctca |
5052170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 53176875 - 53176908
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattca |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
53176875 |
ctcatctaaataatttattttaatcattcattca |
53176908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 46079443 - 46079475
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
46079443 |
accaatgacaccaaaaaactatggcacccaagt |
46079475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 146
Target Start/End: Complemental strand, 11077923 - 11077820
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctc----tcaaaatgaacttatgttaccaatgacaccaaaaaactatggcac |
142 |
Q |
| |
|
|||||| ||||||||||||| | |||||||||||||| | ||||||||| ||||||||||| ||| ||||||| |||| |||||||||| ||| |
|
|
| T |
11077923 |
attctctctcatctaaataactatttttaatcattcatagatcattctctcccatccaaaatgaactaatgccaccaatgtcacccaaaaactatgtcac |
11077824 |
T |
|
| Q |
143 |
ccaa |
146 |
Q |
| |
|
|||| |
|
|
| T |
11077823 |
ccaa |
11077820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 97
Target Start/End: Complemental strand, 40202302 - 40202260
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctctc |
97 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| |||| |||| |
|
|
| T |
40202302 |
tcatctaaataatttattttaataattcattcatcattatctc |
40202260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 84
Target Start/End: Complemental strand, 44015467 - 44015437
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
44015467 |
ctcatctaaataatttattttaatcattcat |
44015437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 19473105 - 19473076
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
19473105 |
tcatctaaataatttattttaatcattcat |
19473076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 100
Target Start/End: Original strand, 29693207 - 29693276
Alignment:
| Q |
31 |
tctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||||| ||||||||| || || || |||||||||||||||||| ||| ||| | |||||||||||| |
|
|
| T |
29693207 |
tctctcttaacaacatattatctcttatttaaataatttattttaattatttatttatcattctctctca |
29693276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 50041876 - 50041839
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
50041876 |
attctctctcatcaaaataatttattttaatcattcat |
50041839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 50049098 - 50049061
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
50049098 |
attctctctcatcaaaataatttattttaatcattcat |
50049061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 9116250 - 9116198
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
||||||||| ||||| | |||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
9116250 |
aaaatgaacctatgtcatcaatgagaccaaaaaattatggcacccaaatattt |
9116198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 29724401 - 29724373
Alignment:
| Q |
57 |
atctaaataatttattttaatcattcatt |
85 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
29724401 |
atctaaataatttattttaatcattcatt |
29724373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 80; Significance: 1e-37; HSPs: 21)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 48915075 - 48914935
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
48915075 |
tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgt |
48914976 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
48914975 |
caccaatgtcacaaaaaaactatggcacccaagtatttccc |
48914935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 48915466 - 48915326
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
48915466 |
tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgt |
48915367 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
48915366 |
caccaatgtcacaaaaaaactatggcacccaagtatttccc |
48915326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 48915265 - 48915127
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctc-tc-aaaatgaacttatgtta |
116 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||||||| ||||||||| || ||||||||| ||||| | |
|
|
| T |
48915265 |
tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattcattcatcattctctcatctaaaatgaacctatgtca |
48915166 |
T |
|
| Q |
117 |
ccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
48915165 |
ccaatgtcacaaaaaaactatggcacccaagtatttccc |
48915127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 50539818 - 50539677
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| | || ||||||||||||||||||||| ||||| |||| |||||| ||||||||||||||| |
|
|
| T |
50539818 |
tttgtgtctatctctctcttaacaactcattctcttttatttaaataatttattttaatcatctattcatcattatctctcttctaaaatgaacttatgt |
50539719 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttcccg |
156 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
50539718 |
caccaatgacaccaataaactatggcacccaagtatttcccg |
50539677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 19456372 - 19456260
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcac |
142 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||||||||| |||| ||||||||| |
|
|
| T |
19456372 |
attctctctcatctaaataatttattttaatcatctattcatcattctctctcatctaaaatgaatctatgtcaccaatgacacc-aaaagctatggcac |
19456274 |
T |
|
| Q |
143 |
ccaagtatttcccg |
156 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
19456273 |
ccaagtatttcccg |
19456260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 48843377 - 48843504
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
|||||||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
48843377 |
tttgtatctatctctctcttaacaattcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcacc |
48843469 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||| |
|
|
| T |
48843470 |
aatggcaccaaaaaactatggcacccaagtatttc |
48843504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 144
Target Start/End: Original strand, 27907704 - 27907822
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| || || ||| ||||||||| ||||| ||| |
|
|
| T |
27907704 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc--tc----tttcatct-aaaatgaacctatgtcacc |
27907796 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcaccc |
144 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
27907797 |
aatgacaccaaaaaactatggcaccc |
27907822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 27032389 - 27032326
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc |
82 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
27032389 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc |
27032326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 97
Target Start/End: Complemental strand, 5398111 - 5398034
Alignment:
| Q |
20 |
ttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctc |
97 |
Q |
| |
|
|||| |||||||||||||| | || |||||| |||||||||||| ||||||||||| ||||||||| ||||||||| |
|
|
| T |
5398111 |
ttgtctctatctctctcttaaccactcattctctctcatctaaatagtttattttaataattcattcatcattctctc |
5398034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 19431452 - 19431399
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || |||||| ||||| |
|
|
| T |
19431452 |
attctctctcatctaaataatttattttaatcattcatccatcattctgtctca |
19431399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 24671185 - 24671238
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
24671185 |
attctctctcatttaaataatttattttaatcattcattcatcactctctctca |
24671238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Original strand, 17923857 - 17923908
Alignment:
| Q |
49 |
tctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||| || |||||||||||| |
|
|
| T |
17923857 |
tctctctcatctaaataatttattttaattattcatccaacattctctctca |
17923908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 51748581 - 51748682
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaa |
146 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| || | || | |||||||| ||||| | ||||| |||||||||||||||||| |||| |
|
|
| T |
51748581 |
attctctctcatctaaataatttattttaatcattc--tc-----tttcatttaaaatgaatctatgtcatcaatggcaccaaaaaactatggcatccaa |
51748673 |
T |
|
| Q |
147 |
gtatttccc |
155 |
Q |
| |
|
||||||||| |
|
|
| T |
51748674 |
gtatttccc |
51748682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 26478599 - 26478703
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtat |
150 |
Q |
| |
|
|||| ||||| |||||||||||| ||||||||| ||||||||||| ||||| ||| | ||| |||||| |||| ||||||||||| || ||| ||| |
|
|
| T |
26478599 |
tcatttaaatgatttattttaattattcattcatcattctctctcatctaaaattaacctttgtcaccaataacactaaaaaactatgacattcaaatat |
26478698 |
T |
|
| Q |
151 |
ttccc |
155 |
Q |
| |
|
||||| |
|
|
| T |
26478699 |
ttccc |
26478703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 153
Target Start/End: Original strand, 49177432 - 49177534
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctctctc-----aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagta |
149 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||| |||||| |||||||| |||| || ||| |||||||| |||||| |||||||||| |
|
|
| T |
49177432 |
tcatctaaataatttattttaatcattca-tcatcattttctctcatctaaaaatgaatcaatgtcactaataacaccaaaggactatgacacccaagta |
49177530 |
T |
|
| Q |
150 |
tttc |
153 |
Q |
| |
|
|||| |
|
|
| T |
49177531 |
tttc |
49177534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 3950358 - 3950304
Alignment:
| Q |
46 |
tattctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
3950358 |
tattctctttcatcaaaataatttattttaatcattcatcgatcattctctctca |
3950304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 96
Target Start/End: Complemental strand, 11872250 - 11872201
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctct |
96 |
Q |
| |
|
|||||| |||||| |||||||||||| |||||||||| ||| |||||||| |
|
|
| T |
11872250 |
attctctctcatcaaaataatttattataatcattcaatcatcattctct |
11872201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 83
Target Start/End: Original strand, 39004654 - 39004683
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattca |
83 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
39004654 |
ctcatctaaataatttattttaatcattca |
39004683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 46325652 - 46325599
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
46325652 |
attctctctcatcaaaataacttattttaatcattcatctatcattctctctca |
46325599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 49315788 - 49315743
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||| |||||||||||||| |
|
|
| T |
49315788 |
tcatcaaaataatttattttaatcactcatctaccattctctctca |
49315743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 49 - 97
Target Start/End: Original strand, 15106239 - 15106287
Alignment:
| Q |
49 |
tctcgctcatctaaataatttattttaatcattcattcaccattctctc |
97 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
15106239 |
tctctctcatgtaaataatttattttaatcattcatctatcattctctc |
15106287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 3e-35; HSPs: 22)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 2628526 - 2628386
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| |||||||||||| ||||||||||||||| ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
2628526 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaatagtttattttaatcatttattcatcattctctctcatctaaaatgaacttatgt |
2628427 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
2628426 |
caccaatggcaccaaaaaactatggcatccaagtatttccc |
2628386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 46425407 - 46425278
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
46425407 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcacc |
46425315 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46425314 |
aatggcaccaaaaaactatggcacccaagtatttccc |
46425278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 58 - 153
Target Start/End: Complemental strand, 9488821 - 9488721
Alignment:
| Q |
58 |
tctaaataatttattttaatcattcattcaccattctc-tctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| | |||| ||||||||||| |||||||||||| ||||| |
|
|
| T |
9488821 |
tctaaataatttattttaatcattcattcatcattctcctctcatctaaaatgaacttatgtcatcaataacaccaaaaaattatggcacccaaatattt |
9488722 |
T |
|
| Q |
153 |
c |
153 |
Q |
| |
|
| |
|
|
| T |
9488721 |
c |
9488721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 18868017 - 18867887
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
18868017 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcacc |
18867925 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttcccg |
156 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||| |
|
|
| T |
18867924 |
aatgacacaaaaaaactatggcatccaagtatttcccg |
18867887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 154
Target Start/End: Complemental strand, 16876806 - 16876678
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| || || ||| ||||||||||||| | | | |
|
|
| T |
16876806 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc--tc----tttcatct-aaaatgaacttatatcatc |
16876714 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttcc |
154 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| |
|
|
| T |
16876713 |
aatggcaccaaaaaactatggcacccaagtatttcc |
16876678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 19 - 153
Target Start/End: Complemental strand, 32279382 - 32279246
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||| | ||| ||||| |||||||||||||||||| ||||||||| |||| |||||| ||||||||| ||||| |
|
|
| T |
32279382 |
tttgtgtctatctctctcttaacaaccca--ctctctcatttaaataatttattttaattattcattcatcattttctctcatctaaaatgaacctatgt |
32279285 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
||| ||||||||||||||||||| || |||| |||||| |
|
|
| T |
32279284 |
caccgatgacaccaaaaaactatgacatccaaatatttc |
32279246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 155
Target Start/End: Original strand, 34328134 - 34328235
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaa |
146 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
34328134 |
attctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggcaccaaaaaactatggcacccaa |
34328226 |
T |
|
| Q |
147 |
gtatttccc |
155 |
Q |
| |
|
||||||||| |
|
|
| T |
34328227 |
gtatttccc |
34328235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 23185992 - 23185929
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc |
82 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23185992 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc |
23185929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 33884105 - 33884052
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || ||| ||||||||||||||| |
|
|
| T |
33884105 |
attctctctcatctaaataatttattttaattatccatccaccattctctctca |
33884052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 54 - 99
Target Start/End: Complemental strand, 37685245 - 37685200
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattcaccattctctctc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||| |
|
|
| T |
37685245 |
ctcatctaaataatttattttaatcattcatccaacattctctctc |
37685200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 43368541 - 43368497
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattcaccattctctct |
98 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||| |
|
|
| T |
43368541 |
ctcatctaaataatttattttaatcattcatccatcattctctct |
43368497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 42971733 - 42971652
Alignment:
| Q |
19 |
tttgtatctatctctctcttg-ccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||| |||||||||||||| ||| || |||||| ||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
42971733 |
tttgtttctatctctctcttaaccatca-attctctctcatctaaataatttattttaatcattcgcccaacattctctctca |
42971652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 7352786 - 7352822
Alignment:
| Q |
60 |
taaataatttattttaatcattcattcaccattctct |
96 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7352786 |
taaataatttattttaatcattcattcaacattctct |
7352822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 100
Target Start/End: Complemental strand, 11369106 - 11369064
Alignment:
| Q |
58 |
tctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||||||||||||||||||||| || || |||||||||||| |
|
|
| T |
11369106 |
tctaaataatttattttaatcatttatccaacattctctctca |
11369064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 15667904 - 15667937
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattca |
87 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| |
|
|
| T |
15667904 |
ctcatttaaataatttattttaatcattcattca |
15667937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 42266486 - 42266449
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
42266486 |
attctcactcatttaaataatttattttaatcattcat |
42266449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 16876819 - 16876851
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
16876819 |
accaatggcaccaaaaaactatggcacccaagt |
16876851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 23185918 - 23185867
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
|||||||||| |||| ||||||| ||| ||||||||||||||||||| ||||| |
|
|
| T |
23185918 |
aaaatgaact-atgtcaccaatggcactaaaaaactatggcacccaaatattt |
23185867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 23186005 - 23186037
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
23186005 |
accaatggcaccaaaaaactatggcacccaagt |
23186037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 95
Target Start/End: Original strand, 33747985 - 33748033
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctc |
95 |
Q |
| |
|
|||||| || ||||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
33747985 |
attctctcttatctaaataatttattttaattgttcattcatcattctc |
33748033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 34328100 - 34328072
Alignment:
| Q |
120 |
atgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34328100 |
atgacaccaaaaaactatggcacccaagt |
34328072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 83
Target Start/End: Complemental strand, 42691131 - 42691095
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattca |
83 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
42691131 |
attctctctcatcaaaataatttattttaatcattca |
42691095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 18)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 10688609 - 10688744
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
10688609 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacttatgt |
10688708 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtat |
150 |
Q |
| |
|
| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
10688709 |
catcaatgataccaaaaaactatagcacccaagtat |
10688744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 54 - 155
Target Start/End: Original strand, 47548872 - 47548977
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagta |
149 |
Q |
| |
|
||||||||||||||||||||||||||| |||||| |||||||||||| |||||||| ||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
47548872 |
ctcatctaaataatttattttaatcatccattcaacattctctctcatctaaaatgaacctatgttaccaatggcaccaaaaaaccatggcacccaagta |
47548971 |
T |
|
| Q |
150 |
tttccc |
155 |
Q |
| |
|
|||||| |
|
|
| T |
47548972 |
tttccc |
47548977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 27 - 153
Target Start/End: Original strand, 50700026 - 50700151
Alignment:
| Q |
27 |
tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctc-tc-aaaatgaacttatgttaccaatgac |
124 |
Q |
| |
|
|||||||||||| |||| |||||| ||| |||||||||||||||||||||||| ||||| ||||||||| || ||||||||||||||| ||||||| | |
|
|
| T |
50700026 |
tatctctctctt---aacacattctctctcgtctaaataatttattttaatcatttattcatcattctctcatctaaaatgaacttatgtcaccaatggc |
50700122 |
T |
|
| Q |
125 |
accaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
|| |||||||||| ||| ||||||||||| |
|
|
| T |
50700123 |
actaaaaaactatagcatccaagtatttc |
50700151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 39994192 - 39994321
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||||||||||||||| || |||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||| ||||||||| ||| |
|
|
| T |
39994192 |
tttgtatctatctctcttttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaattaacttatgtcacc |
39994284 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39994285 |
aatgacaccaaaaaactatggcacccaagtatttccc |
39994321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 4037142 - 4037272
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
4037142 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcacc |
4037234 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttcccg |
156 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4037235 |
aatggcaccaaaaaactatggcacccaagtatttcccg |
4037272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 49279490 - 49279616
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| || || ||| |||||||||||||| ||| |
|
|
| T |
49279490 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc--tc----tttcatct-aaaatgaacttatg-cacc |
49279581 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||| |
|
|
| T |
49279582 |
aatgacatcaaaaaactatggcacccaaatatttc |
49279616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 152
Target Start/End: Original strand, 11233507 - 11233633
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| || || ||| ||||| ||||||||| | | |
|
|
| T |
11233507 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc--tc----tttcatct-aaaataaacttatgtcatc |
11233599 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |
|
|
| T |
11233600 |
aatgacactaaaaaactatgacacccaagtattt |
11233633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 100 - 151
Target Start/End: Complemental strand, 34272458 - 34272407
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatt |
151 |
Q |
| |
|
||||||||| ||||| |||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
34272458 |
aaaatgaacctatgtcaccaataacaccaaaaaactatggcacctaagtatt |
34272407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 39485530 - 39485479
Alignment:
| Q |
49 |
tctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| || | |||||||||| |
|
|
| T |
39485530 |
tctctctcatctaaataatttattttaatcattcatccaaccttctctctca |
39485479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 39972993 - 39973056
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc |
82 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| |||||| |||||||||||||||||||||| |
|
|
| T |
39972993 |
tttgtgtctatctctctcttaacaactcattctctctcatcaaaataatttattttaatcattc |
39973056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 39350798 - 39350750
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||||| |||| ||||||| ||||||||||||||||||||||||| |
|
|
| T |
39350798 |
aaaatgaacctatggcaccaatggcaccaaaaaactatggcacccaagt |
39350750 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 124 - 155
Target Start/End: Original strand, 39973082 - 39973113
Alignment:
| Q |
124 |
caccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
39973082 |
caccaaaaaactatggcacccaagtatttccc |
39973113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 100
Target Start/End: Original strand, 132151 - 132184
Alignment:
| Q |
67 |
tttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||| |
|
|
| T |
132151 |
tttattttaatcattcattcatcattctctctca |
132184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 20345080 - 20345117
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
20345080 |
attctctctcatttaaataatttattttaatcattcat |
20345117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 46348454 - 46348401
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| ||||| |||||| ||||| ||||| ||||||||| |||||||||||| |
|
|
| T |
46348454 |
attctctctcatttaaatagtttatcttaataattcattcatcattctctctca |
46348401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 4037129 - 4037097
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
4037129 |
accaatggcaccaaaaaactatggcacccaagt |
4037097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 58 - 94
Target Start/End: Complemental strand, 42467008 - 42466972
Alignment:
| Q |
58 |
tctaaataatttattttaatcattcattcaccattct |
94 |
Q |
| |
|
|||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
42467008 |
tctaaataatttattttaattattcattcatcattct |
42466972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 49279477 - 49279445
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| |
|
|
| T |
49279477 |
accaatgacaccaaaaaactatggcatccaagt |
49279445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 18)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 17 - 155
Target Start/End: Complemental strand, 41069765 - 41069623
Alignment:
| Q |
17 |
catttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttat |
112 |
Q |
| |
|
||||||| ||||||| |||||| ||| |||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||| |
|
|
| T |
41069765 |
catttgtgtctatctgtctcttaacaattcattctctctcatctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctat |
41069666 |
T |
|
| Q |
113 |
gttaccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|| ||||||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
41069665 |
gtcaccaatggcaccaaaaaattatggcacccaagtatttccc |
41069623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 25 - 155
Target Start/End: Complemental strand, 6752158 - 6752024
Alignment:
| Q |
25 |
tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaa |
120 |
Q |
| |
|
|||||||||||||| |||| || | || |||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||| | ||| |
|
|
| T |
6752158 |
tctatctctctcttaacaacttactttctctcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacttatgtcatcaa |
6752059 |
T |
|
| Q |
121 |
tgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||| |
|
|
| T |
6752058 |
tggtaccaaaaaactatggcacccaagtatttccc |
6752024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 39728987 - 39729068
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||| ||||| ||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
39728987 |
tttgtgtctatttctttcttaccaacatattctctctcatctaaataatttattttaatcattcattcatcattctctctca |
39729068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 11226147 - 11226279
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
11226147 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattcattcgtcattctctctcatttaaaatgaacctatgt |
11226246 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
11226247 |
cacca--------aaaaaactatggcacccaagtatttccc |
11226279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 15141881 - 15142010
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| ||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
15141881 |
tttgtgtctatctctcttttaacaacttattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcacc |
15141973 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15141974 |
aatgacatcaaaaaactatggcacccaagtatttccc |
15142010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 17 - 153
Target Start/End: Original strand, 23395932 - 23396063
Alignment:
| Q |
17 |
catttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttat |
112 |
Q |
| |
|
||||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||||||| ||| |
|
|
| T |
23395932 |
catttgtgtctatctctctcttaacaactcattctctatcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacctat |
23396031 |
T |
|
| Q |
113 |
gttaccaatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
|| |||||||||||||||||||||||||||||| |
|
|
| T |
23396032 |
gt---------caccaaaaaactatggcacccaagtatttc |
23396063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 127
Target Start/End: Complemental strand, 36562802 - 36562721
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctc-tcaaaatgaacttatgttaccaatgacacc |
127 |
Q |
| |
|
|||||| |||||||||||||||||||||| ||||||||||| ||||||||| | |||||||||| ||| ||||||||||||| |
|
|
| T |
36562802 |
attctctctcatctaaataatttattttactcattcattcatcattctctcataaaaatgaactaatggtaccaatgacacc |
36562721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 31750465 - 31750604
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgt |
114 |
Q |
| |
|
||||| |||||||||||||| ||| ||| || ||||||||||| ||||||||||||||||||||| |||||||| | | ||||||| ||||| |
|
|
| T |
31750465 |
tttgtgtctatctctctcttaacaattcattttctctcatctaaat--tttattttaatcattcattcatcattctctgtgatctaaaatgaatatatgt |
31750562 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttcccg |
156 |
Q |
| |
|
||||||| |||||| ||||||||||||| |||||||||||| |
|
|
| T |
31750563 |
caccaatggcaccaacaaactatggcacctaagtatttcccg |
31750604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 27 - 152
Target Start/End: Complemental strand, 19037128 - 19037010
Alignment:
| Q |
27 |
tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacac |
126 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||||||| ||| |
|
|
| T |
19037128 |
tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcaccaatggcac |
19037036 |
T |
|
| Q |
127 |
caaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
19037035 |
taaaaaactatggcacccaagtattt |
19037010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 32832655 - 32832602
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
32832655 |
attctctctcatctaaataatttattttaatcattcatccaacattctctctca |
32832602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Complemental strand, 3496868 - 3496805
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc |
82 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3496868 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc |
3496805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 94
Target Start/End: Original strand, 8209322 - 8209369
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattct |
94 |
Q |
| |
|
|||||| |||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
8209322 |
attctctctcatcaaaataatttattttaatcattcatttaccattct |
8209369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 13477749 - 13477700
Alignment:
| Q |
49 |
tctcgctcatctaaataatttattttaatcattcattcaccattctctct |
98 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
13477749 |
tctctctcatttaaataaattattttaatcattcattcatcattctctct |
13477700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 87
Target Start/End: Complemental strand, 33433473 - 33433440
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattca |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
33433473 |
ctcatctaaataatttattttaatcattcattca |
33433440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 84
Target Start/End: Complemental strand, 38529934 - 38529905
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
38529934 |
tcatctaaataatttattttaatcattcat |
38529905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 83
Target Start/End: Original strand, 8044317 - 8044345
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattca |
83 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8044317 |
tcatctaaataatttattttaatcattca |
8044345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 19037168 - 19037200
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
19037168 |
accaatggcaccaaaaaactatggcacccaagt |
19037200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 39707503 - 39707535
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
39707503 |
accaatggcaccaaaaaactatggcacccaagt |
39707535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 18)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 27 - 152
Target Start/End: Original strand, 2651631 - 2651751
Alignment:
| Q |
27 |
tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttaccaatgacac |
126 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||| ||| |
|
|
| T |
2651631 |
tatctctctcttaccaacatattctatctcatctaaataatttattttaatcattcattcatacatct-----aaaatgaacttatgtcaccaatggcac |
2651725 |
T |
|
| Q |
127 |
caaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
2651726 |
caaaaaactatggcacccaagtattt |
2651751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 155
Target Start/End: Original strand, 34928831 - 34928935
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtat |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||| |||||||| ||||| | ||||||||| ||||||||||||||||||||||| |
|
|
| T |
34928831 |
tcatctaaataatttattttaatcattcatttatcattctctctcatctaaaatgaacatatgtcatcaatgacactaaaaaactatggcacccaagtat |
34928930 |
T |
|
| Q |
151 |
ttccc |
155 |
Q |
| |
|
||||| |
|
|
| T |
34928931 |
ttccc |
34928935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 55 - 152
Target Start/End: Original strand, 22658864 - 22658965
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctctctca----aaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtat |
150 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||||||||| |||||||||||||||||||| || ||| |
|
|
| T |
22658864 |
tcatttaaataatttattttaatcattcattcatcattctctttcatctaaaatgaacttatgttaccaatcgcaccaaaaaactatggcacctaaatat |
22658963 |
T |
|
| Q |
151 |
tt |
152 |
Q |
| |
|
|| |
|
|
| T |
22658964 |
tt |
22658965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 37480357 - 37480412
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37480357 |
aaaatgaacttatgtcaccaatgacaccaaaaaactatagcacccaagtatttccc |
37480412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 152
Target Start/End: Complemental strand, 14151993 - 14151895
Alignment:
| Q |
58 |
tctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| ||||||||| ||||| | |||||||| |||||||||||| |||||||||||| |
|
|
| T |
14151993 |
tctaaataatttattttaatcattcattcattattatctctcatctaaaatgaacctatgtcatcaatgacatcaaaaaactatgatacccaagtattt |
14151895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 27554992 - 27554872
Alignment:
| Q |
40 |
ccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgttaccaatgacaccaaaaaact |
135 |
Q |
| |
|
|||||||||| || |||||||||||||| ||||||||| ||| ||||| |||| |||||| ||||| ||||||| | | ||||| || |||||||| |
|
|
| T |
27554992 |
ccaacatattttctctcatctaaataatctattttaattatttattcatcattttctctcatctaaaataaacttatatcatcaatggcagtaaaaaact |
27554893 |
T |
|
| Q |
136 |
atggcacccaagtatttcccg |
156 |
Q |
| |
|
|||||||| |||||||||||| |
|
|
| T |
27554892 |
atggcaccaaagtatttcccg |
27554872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 33953157 - 33953210
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| ||||||||||||||| |
|
|
| T |
33953157 |
attctctctcatctaaataatttattttaattattcatccaccattctctctca |
33953210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 19824613 - 19824666
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
19824613 |
attctctctcatctaaataatttattttaatcattcatctaacattctctctca |
19824666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 25089454 - 25089502
Alignment:
| Q |
178 |
tatataagtttaaaatacacattcgcgcttcagttttcactctcataac |
226 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||||| ||||||| |
|
|
| T |
25089454 |
tatataagtttaaaaaacacattcgcgctttagttttcactttcataac |
25089502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 54 - 100
Target Start/End: Complemental strand, 22029905 - 22029859
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
22029905 |
ctcatccaaataatttattttaatcattcatccaacattctctctca |
22029859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 37515652 - 37515524
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| ||| || |||||||||||||||||||||||||||| || || | ||| ||||||||||||||| | | |
|
|
| T |
37515652 |
tttgtgtctatctctctcttaacaactcattatctatcatctaaataatttattttaatcattc--tc----ttttatct-aaaatgaacttatgtcatc |
37515560 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||| ||||| ||||||||||||||||| |||||||| |
|
|
| T |
37515559 |
aataacacc-aaaaactatggcacccagatatttccc |
37515524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 22473611 - 22473665
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
||||||||| ||||| |||| || | |||||||||||||||||||||||||||||| |
|
|
| T |
22473611 |
aaaatgaacatatgtcacca-tggcgccaaaaaactatggcacccaagtatttccc |
22473665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 49 - 100
Target Start/End: Complemental strand, 33922922 - 33922871
Alignment:
| Q |
49 |
tctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||||| | |||||||||||| |
|
|
| T |
33922922 |
tctctctcatctacattatttattttaatcattcatttatcattctctctca |
33922871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 31882600 - 31882650
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctc |
97 |
Q |
| |
|
|||||| |||||||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
31882600 |
attctctctcatctaaataatttattttaattattcatcaaacattctctc |
31882650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 2630861 - 2630808
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| | |||||||||||||||| || ||||||||| || |||||||||||| |
|
|
| T |
2630861 |
attctctcacatctaaataatttatgtttatcattcatccaacattctctctca |
2630808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 18623638 - 18623597
Alignment:
| Q |
57 |
atctaaataatttattttaatcattcattcaccattctctct |
98 |
Q |
| |
|
|||||||||||||||||||||||||||| | |||||||||| |
|
|
| T |
18623638 |
atctaaataatttattttaatcattcatctatcattctctct |
18623597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 226
Target Start/End: Original strand, 25147423 - 25147472
Alignment:
| Q |
178 |
tatataagtttaaaataca-cattcgcgcttcagttttcactctcataac |
226 |
Q |
| |
|
||||||||||||||| ||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
25147423 |
tatataagtttaaaaaacaacattcgcgctttagttttcactttcataac |
25147472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 42321089 - 42321142
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| |||||||||||||| |||||||| ||||||| | |||||||||||| |
|
|
| T |
42321089 |
attctctctcatctaaataatatattttaaacattcatctaacattctctctca |
42321142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 155
Target Start/End: Complemental strand, 4835060 - 4834920
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctc----aaaatgaacttatgt |
114 |
Q |
| |
|
||||| ||||||| |||||| |||| |||||| ||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||| |
|
|
| T |
4835060 |
tttgtgtctatctttctcttaacaactcattctctttcacctaaataatttattttaatcattcattcatcattctctctcatctaaaatgaacctatgt |
4834961 |
T |
|
| Q |
115 |
taccaatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4834960 |
caccaatatcaccaaaaaactatggcacccaagtatttccc |
4834920 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 33938682 - 33938556
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| ||| |||||| |||||||||||||||||||||||||||| || || | ||| ||||||||| ||||| | | |
|
|
| T |
33938682 |
tttgtgtctatctctctcttaacaattcattctctctcatctaaataatttattttaatcatta--tc----ttttatct-aaaatgaacctatgtcatc |
33938590 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
33938589 |
aatggcaccaaaaaactatggcacccaagtattt |
33938556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 156
Target Start/End: Original strand, 16467674 - 16467730
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtatttcccg |
156 |
Q |
| |
|
||||||||| ||| | ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
16467674 |
aaaatgaacctatatcaccaatgtcaccaaaaaactatcgcacccaagtatttcccg |
16467730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 16499825 - 16499773
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
||||||||| ||| | ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
16499825 |
aaaatgaacctatatcaccaatgtcaccaaaaaactatggcacccaagtattt |
16499773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 20896249 - 20896212
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
20896249 |
attctctctcatctaaataatttattttaatcattcat |
20896212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 152
Target Start/End: Complemental strand, 16508750 - 16508698
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgacaccaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
||||||||| ||| | ||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
16508750 |
aaaatgaacctatatcaccaatgtcaccaaaaaaatatggcacccaagtattt |
16508698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 87
Target Start/End: Complemental strand, 41474362 - 41474300
Alignment:
| Q |
25 |
tctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattca |
87 |
Q |
| |
|
||||| |||||||| |||| |||| || || || |||||||||||||||||||||||||||| |
|
|
| T |
41474362 |
tctatttctctcttaacaacttattatctcttatttaaataatttattttaatcattcattca |
41474300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Complemental strand, 44132935 - 44132898
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
44132935 |
attctctctcatcaaaataatttattttaatcattcat |
44132898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 82
Target Start/End: Original strand, 16467627 - 16467663
Alignment:
| Q |
46 |
tattctcgctcatctaaataatttattttaatcattc |
82 |
Q |
| |
|
||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
16467627 |
tattctctctcatctaaataatttagtttaatcattc |
16467663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 148
Target Start/End: Original strand, 16508846 - 16508878
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
16508846 |
accaatggcaccaaaaaactatggcacccaagt |
16508878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 29768347 - 29768303
Alignment:
| Q |
109 |
ttatgttaccaatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
|||||||||||||| || ||||||| ||||||| ||||||||||| |
|
|
| T |
29768347 |
ttatgttaccaatggcatcaaaaaattatggcatccaagtatttc |
29768303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 156
Target Start/End: Original strand, 9928262 - 9928392
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| |||||||||||||| |||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
9928262 |
tttgtgtctatctctctcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcacc |
9928354 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttcccg |
156 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
9928355 |
aatggcaccaaaaaactatggcacccaagtatttcccg |
9928392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 22469700 - 22469829
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| ||||||||| |||| |||| |||||| ||||||||||||||||||||||||||||| | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
22469700 |
tttgtgtctatctctttcttaacaactcattctctctcatctaaataatttattttaatcattctct-----ttca-tct-aaaatgaacctatgtcacc |
22469792 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttccc |
155 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||||||| |
|
|
| T |
22469793 |
aatggcaccaaaaaactatggcacccgagtatttccc |
22469829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 100
Target Start/End: Original strand, 457685 - 457731
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
457685 |
ctcatctaaataatttattttaatcattcatccatcattctctctca |
457731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 7506641 - 7506696
Alignment:
| Q |
27 |
tatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc |
82 |
Q |
| |
|
|||||||||||| |||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7506641 |
tatctctctcttaacaactcattctctctcatctaaataatttattttaatcattc |
7506696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 28963652 - 28963599
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
|||||| |||||| |||||| ||||||||||||||||||| |||||||||||| |
|
|
| T |
28963652 |
attctctctcatcaaaataagttattttaatcattcattcttcattctctctca |
28963599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 116 - 148
Target Start/End: Complemental strand, 22469687 - 22469655
Alignment:
| Q |
116 |
accaatgacaccaaaaaactatggcacccaagt |
148 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
22469687 |
accaatgacaccaaaaaactatggcacccaagt |
22469655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 82
Target Start/End: Original strand, 31743861 - 31743922
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattc |
82 |
Q |
| |
|
||||| ||||||||||| || |||| ||||||| |||||||||||||||||||||||||||| |
|
|
| T |
31743861 |
tttgtgtctatctctcttttaacaacttattctc--tcatctaaataatttattttaatcattc |
31743922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 6139347 - 6139381
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcatt |
81 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
|
|
| T |
6139347 |
attctctctcatctaaataatttattttaatcatt |
6139381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 3037428 - 3037383
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctctctca |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||| || |||| ||||||| |
|
|
| T |
3037428 |
tcatctaaaaaatttattttaatcattcatccaacattttctctca |
3037383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 8585739 - 8585780
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcattcaccattctct |
96 |
Q |
| |
|
|||||||||| ||||||||||||||||||| || |||||||| |
|
|
| T |
8585739 |
tcatctaaatcatttattttaatcattcatccatcattctct |
8585780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 47 - 84
Target Start/End: Original strand, 28067341 - 28067378
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||||||| |
|
|
| T |
28067341 |
attctctctcatcaaaataatttattttaatcattcat |
28067378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 31743933 - 31743986
Alignment:
| Q |
100 |
aaaatgaacttatgttaccaatgac-accaaaaaactatggcacccaagtattt |
152 |
Q |
| |
|
||||||||||||||||||||||| | | ||||||||||||||||||| ||||| |
|
|
| T |
31743933 |
aaaatgaacttatgttaccaatggcaataaaaaaactatggcacccaaatattt |
31743986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 47 - 100
Target Start/End: Original strand, 9549395 - 9549452
Alignment:
| Q |
47 |
attctcgctcatctaaataatttattttaatcat----tcattcaccattctctctca |
100 |
Q |
| |
|
|||||| || || ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
9549395 |
attctctctaatttaaataatttattttaatcattcattcattcaccattctctctca |
9549452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0176
Description:
Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 153
Target Start/End: Original strand, 15092 - 15219
Alignment:
| Q |
19 |
tttgtatctatctctctcttgccaacatattctcgctcatctaaataatttattttaatcattcattcaccattctctctcaaaatgaacttatgttacc |
118 |
Q |
| |
|
||||| ||||||||| |||| |||| |||||| |||||| ||||||||||||||||||||| | | ||| ||| ||||||||| ||||| ||| |
|
|
| T |
15092 |
tttgtgtctatctctatcttaacaactcattctctctcatcaaaataatttattttaatcatt-----atctttca-tct-aaaatgaacatatgtcacc |
15184 |
T |
|
| Q |
119 |
aatgacaccaaaaaactatggcacccaagtatttc |
153 |
Q |
| |
|
|||| |||||||||| ||||||||||||||||||| |
|
|
| T |
15185 |
aatggcaccaaaaaattatggcacccaagtatttc |
15219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0176; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 113 - 146
Target Start/End: Complemental strand, 15091 - 15058
Alignment:
| Q |
113 |
gttaccaatgacaccaaaaaactatggcacccaa |
146 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| |
|
|
| T |
15091 |
gttacctatgacaccaaaaaactatggcacccaa |
15058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0289 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0289
Description:
Target: scaffold0289; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 87
Target Start/End: Original strand, 20321 - 20354
Alignment:
| Q |
54 |
ctcatctaaataatttattttaatcattcattca |
87 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
20321 |
ctcatctaaataatttattttaatcattcattca |
20354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0085 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0085
Description:
Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 84
Target Start/End: Original strand, 31608 - 31637
Alignment:
| Q |
55 |
tcatctaaataatttattttaatcattcat |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
31608 |
tcatctaaataatttattttaatcattcat |
31637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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