View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21650_high_1 (Length: 447)
Name: NF21650_high_1
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21650_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 397; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Original strand, 43614551 - 43614959
Alignment:
| Q |
19 |
ataaggtgtaatcaattattcatatacattttcactgtcaaatatgggtgaactaggtccatatttggctgtgtttatactacaattaatatattctggg |
118 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43614551 |
ataaagtgtaatcaattattcatatacattttcactgtcaaatatgggtgaactaggtccatatttggctgtgtttatactacaattaatatattctggg |
43614650 |
T |
|
| Q |
119 |
atgactttgctgtccaaggccgcgtttaacggaggaatgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttat |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43614651 |
atgactttgctgtccaaggccgcgtttaacggaggaatgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttat |
43614750 |
T |
|
| Q |
219 |
ttttgatatttgaacggtaatgttgataaatatgttctgtttttctttcctatagttttacttgatttttccctgacataatactttattatatggtcca |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43614751 |
ttttgatatttgaacggtaatgttgataaatatgttctgtttttctttcctatagttttacttgatttttccctgacataatactttattatatggtcca |
43614850 |
T |
|
| Q |
319 |
ggaaacaagccgtgccagtaatattctcatttatgaccatcttcaagatttttatgctttcattattggggtacgtagtacattattttaattattctct |
418 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43614851 |
ggaaacaagccgtgccagcaatattctcatttataaccatcttcaagatttttatgctttcattattggggtacgtagtacattattttaattattctct |
43614950 |
T |
|
| Q |
419 |
aatctttat |
427 |
Q |
| |
|
||||||||| |
|
|
| T |
43614951 |
aatctttat |
43614959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 19 - 391
Target Start/End: Original strand, 43609240 - 43609612
Alignment:
| Q |
19 |
ataaggtgtaatcaattattcatatacattttcactgtcaaatatgggtgaactaggtccatatttggctgtgtttatactacaattaatatattctggg |
118 |
Q |
| |
|
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43609240 |
ataaggtgtaaacaatcattcatatacattttcactgtcaaatatgggtgaactaggtccatatttggctgtgtttataatacaattaatatattctggg |
43609339 |
T |
|
| Q |
119 |
atgactttgctgtccaaggccgcgtttaacggaggaatgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttat |
218 |
Q |
| |
|
||||||||| | ||||| || | ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
43609340 |
atgactttgttatccaaagctgtgtttaacggaggaatgaaaacatatgtgtttgttttttatagacaactgattggagccattatcatggtccctttag |
43609439 |
T |
|
| Q |
219 |
ttttgatatttgaacggtaatgttgataaatatgttctgtttttctttcctatag-ttttacttgatttttccctgacataatactttattatatggtcc |
317 |
Q |
| |
|
||| ||||||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||| ||||| || || ||||||||||||||||||||| |
|
|
| T |
43609440 |
ctttaatatttgaaaggtaatgttgaaaaatatgttctgtttttctttcctatagtttttacttga-ttttctctaacgtaatactttattatatggtcc |
43609538 |
T |
|
| Q |
318 |
aggaaacaagccgtgccagtaatattctcatttatgaccatcttcaagatttttatgctttcattattggggta |
391 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43609539 |
aggaaacaagccgtgccagtaacattctcatttatgaccatcttcaagatttttatgctttcattattggggta |
43609612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 25 - 262
Target Start/End: Original strand, 43602805 - 43603050
Alignment:
| Q |
25 |
tgtaatcaattattcatatacattttcactgtcaaatatgg------gtgaactaggtccatatttggctgtgtttatactacaattaatatattctggg |
118 |
Q |
| |
|
|||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||| || ||||| | | | |||||||||||| | ||| |
|
|
| T |
43602805 |
tgtaatcaatcattcatatacattttcatcgtcaaatatgactatgagtgaactaggtccatatttagcagtgttaacaatgcaattaatatatgccggg |
43602904 |
T |
|
| Q |
119 |
atgactttgctgtccaaggccgcgtttaacggaggaatgaaaacatctgtgtttgttttttatagacagctgattggagccattatcatggtccctttat |
218 |
Q |
| |
|
||||| ||| |||||||||||| |||||||| |||||||||||| ||||||||||| || || ||||| |||||||||||||| || ||||||||||| |
|
|
| T |
43602905 |
atgaccttgatgtccaaggccgtgtttaacgaaggaatgaaaacctctgtgtttgtcttctacagacaactgattggagccatgattatggtccctttgg |
43603004 |
T |
|
| Q |
219 |
ttttgatatttgaacggt---aatgttgataaatatgttctgttttt |
262 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||| ||||||||| |
|
|
| T |
43603005 |
ctttgatatttgaacggtaacaatgttga-aaatatgatctgttttt |
43603050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 308 - 391
Target Start/End: Original strand, 43603120 - 43603203
Alignment:
| Q |
308 |
tatatggtccaggaaacaagccgtgccagtaatattctcatttatgaccatcttcaagatttttatgctttcattattggggta |
391 |
Q |
| |
|
|||||||||||| ||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
43603120 |
tatatggtccagcaaacaagccgtgccagtgaaattctcatttaagaccatcttcaagatttttatgctttcactatttgggta |
43603203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University