View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21650_high_18 (Length: 220)
Name: NF21650_high_18
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21650_high_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 43139621 - 43139436
Alignment:
| Q |
18 |
atgaatattagagtgtgttagaaagatagtcttcttcacattttttatttcatacaatccacacagcacagtacagttatcacacacatacataaatata |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
43139621 |
atgaatattagagtgtgttagaaagatagtcttcttcacattttttatttcatacaatccacacagcacaatacagttatcacacacatacataaatata |
43139522 |
T |
|
| Q |
118 |
tatatcaaatttcattaagtattttatttaattgtttttaaccttggacatttcatattatattacaataactatagggaaatttt |
203 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43139521 |
tatatcaaatttcattaagtattttctttaattgtttttaaccttggacatttcatattatattacaataactatagggaaatttt |
43139436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University