View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21650_high_7 (Length: 297)

Name: NF21650_high_7
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21650_high_7
NF21650_high_7
[»] chr3 (5 HSPs)
chr3 (165-269)||(41980202-41980306)
chr3 (79-133)||(17441804-17441858)
chr3 (83-133)||(17472049-17472099)
chr3 (193-276)||(41984138-41984221)
chr3 (81-125)||(8820460-8820504)
[»] chr2 (5 HSPs)
chr2 (79-133)||(45109479-45109533)
chr2 (90-133)||(45107771-45107814)
chr2 (83-133)||(37349816-37349866)
chr2 (89-133)||(4108913-4108957)
chr2 (81-125)||(13968988-13969032)
[»] chr7 (4 HSPs)
chr7 (81-133)||(23792802-23792854)
chr7 (79-125)||(12611860-12611906)
chr7 (81-125)||(17835141-17835185)
chr7 (81-125)||(25248880-25248924)
[»] chr1 (4 HSPs)
chr1 (181-276)||(18990832-18990927)
chr1 (81-133)||(7351735-7351787)
chr1 (81-133)||(13117385-13117437)
chr1 (83-120)||(7644721-7644758)
[»] chr5 (2 HSPs)
chr5 (81-133)||(22860691-22860743)
chr5 (81-133)||(38472251-38472303)
[»] chr4 (4 HSPs)
chr4 (81-125)||(24826676-24826720)
chr4 (81-133)||(25243482-25243534)
chr4 (89-133)||(31954817-31954861)
chr4 (81-133)||(40137895-40137945)


Alignment Details
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 269
Target Start/End: Complemental strand, 41980306 - 41980202
Alignment:
Q  165 attagtattttgtttcaattcctagacttggtttaatctcttgctattatttatgtcccagcaatatgacagtaattgccaaaagtgttatatatcctag 264  Q
    |||| ||||||||||||||||||| |||||||||||||| ||||||||||  ||||||  ||||||||||| | |||||| |||||| | ||| | ||||    
T  41980306 attattattttgtttcaattcctaaacttggtttaatcttttgctattatcgatgtcctggcaatatgacattgattgcccaaagtgatctattttctag 41980207  T
Q  265 aagac 269  Q
    |||||    
T  41980206 aagac 41980202  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 79 - 133
Target Start/End: Complemental strand, 17441858 - 17441804
Alignment:
Q  79 aatgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||||| |||||||||||||| ||||||||||| |||||||||| |||||||    
T  17441858 aatgttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaa 17441804  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 17472099 - 17472049
Alignment:
Q  83 ttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||| |||||||||||||| ||||||||||| |||||||||| |||||||    
T  17472099 ttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaa 17472049  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 276
Target Start/End: Complemental strand, 41984221 - 41984138
Alignment:
Q  193 tggtttaatctcttgctattatttatgtcccagcaatatgacagtaattgccaaaagtgttatatatcctagaagacttggtat 276  Q
    ||||||||||| || |||||||||||||||  ||||||||||||| ||  |||| | |||| ||| | | ||||||||||||||    
T  41984221 tggtttaatcttttactattatttatgtcctggcaatatgacagtgatatccaacactgttctattttccagaagacttggtat 41984138  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 8820460 - 8820504
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgct 125  Q
    ||||||| |||| ||||||||| ||||||||||| ||||||||||    
T  8820460 tgttcacgtatgaaaacacaagttaattacaacaggtgagctgct 8820504  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 79 - 133
Target Start/End: Original strand, 45109479 - 45109533
Alignment:
Q  79 aatgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||| |||||||    
T  45109479 aatgttcacgtatgtaaacacaagataattacaacaggtgagctgctcagtgaaa 45109533  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 45107771 - 45107814
Alignment:
Q  90 atgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||||||||||||||||||||| |||||||||| |||||||    
T  45107771 atgtaaacacaagataattacaacaggtgagctgctcagtgaaa 45107814  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 133
Target Start/End: Complemental strand, 37349866 - 37349816
Alignment:
Q  83 ttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||| |||||||||||||| ||||||||||| |||||||||| |||||||    
T  37349866 ttcacgtatgtaaacacaagttaattacaacaggtgagctgctcagtgaaa 37349816  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 4108913 - 4108957
Alignment:
Q  89 tatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||    
T  4108913 tatgtaaacacaagttaattacaacaggtgagctgctcagtgaaa 4108957  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 13969032 - 13968988
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgct 125  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  13969032 tgttcacgtatgtaaacacaagttaattacaacaagtgagctgct 13968988  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 23792854 - 23792802
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||| |||||||||||||||||||||||||||||||| |||| |||||||    
T  23792854 tgttcacgtatgtaaacacaagataattacaacatgtgagttgctcagtgaaa 23792802  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 12611860 - 12611906
Alignment:
Q  79 aatgttcacctatgtaaacacaagataattacaacatgtgagctgct 125  Q
    ||||||||| |||||||||||||| ||||||||||| ||||||||||    
T  12611860 aatgttcacgtatgtaaacacaagttaattacaacaggtgagctgct 12611906  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 17835185 - 17835141
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgct 125  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  17835185 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgct 17835141  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Original strand, 25248880 - 25248924
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgct 125  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  25248880 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgct 25248924  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 276
Target Start/End: Complemental strand, 18990927 - 18990832
Alignment:
Q  181 aattcctagacttggtttaatctcttgctattatttatgtcccagcaatatgacagtaattgccaaaagtgttatatatcctagaagacttggtat 276  Q
    |||||||| |||||||||||||| || ||||||||||||||    || ||||| ||| |||||||||||| || ||| || |||||||||||||||    
T  18990927 aattcctatacttggtttaatcttttactattatttatgtcatgacagtatgatagtgattgccaaaagttttctatttcgtagaagacttggtat 18990832  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 133
Target Start/End: Original strand, 7351735 - 7351787
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||| |||||||||||||||||||||||||| ||||||| || |||||||    
T  7351735 tgttcacgtatgtaaacacaagataattacaacaggtgagctactcagtgaaa 7351787  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 13117437 - 13117385
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||| |||||||||||||| |||||||| ||| ||||||||| |||||||    
T  13117437 tgttcacgtatgtaaacacaagttaattacaccatatgagctgctcagtgaaa 13117385  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 120
Target Start/End: Complemental strand, 7644758 - 7644721
Alignment:
Q  83 ttcacctatgtaaacacaagataattacaacatgtgag 120  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  7644758 ttcacgtatgtaaacacaagttaattacaacatgtgag 7644721  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 22860743 - 22860691
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||| |||||||||| ||| ||||||||||| ||||||||||||||||||    
T  22860743 tgttcacgtatgtaaacataagttaattacaacaggtgagctgcttagtgaaa 22860691  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 38472303 - 38472251
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||| |||||||||||||| |||||||||||  ||||||||| |||||||    
T  38472303 tgttcacgtatgtaaacacaagttaattacaacagatgagctgctcagtgaaa 38472251  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 125
Target Start/End: Complemental strand, 24826720 - 24826676
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgct 125  Q
    ||||||| |||||||||||||| ||||||||||| ||||||||||    
T  24826720 tgttcacgtatgtaaacacaagttaattacaacaggtgagctgct 24826676  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 25243534 - 25243482
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||| |||||||||||||  ||||||||||| |||||||||| |||||||    
T  25243534 tgttcacgtatgtaaacacaaattaattacaacaggtgagctgctcagtgaaa 25243482  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Complemental strand, 31954861 - 31954817
Alignment:
Q  89 tatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    |||||||||||||| ||||||||||| |||||||||| |||||||    
T  31954861 tatgtaaacacaagttaattacaacaggtgagctgctcagtgaaa 31954817  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 81 - 133
Target Start/End: Complemental strand, 40137945 - 40137895
Alignment:
Q  81 tgttcacctatgtaaacacaagataattacaacatgtgagctgcttagtgaaa 133  Q
    ||||||| ||||||||||  || ||||||||||| ||||||||||||||||||    
T  40137945 tgttcacgtatgtaaaca--agttaattacaacaggtgagctgcttagtgaaa 40137895  T

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