View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21650_high_9 (Length: 293)
Name: NF21650_high_9
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21650_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 27 - 228
Target Start/End: Complemental strand, 4896995 - 4896794
Alignment:
| Q |
27 |
ttttcttaatatatagccactctgattttggtaggatatgagaagttttgttcagatggtgatgttagagacgtgaaaagaaatggtatgttagtggttt |
126 |
Q |
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| T |
4896995 |
ttttcttaatatatagccactctgattttggtaggatatgagaagttttgttcagatggtgatgttagagacgtgaaaagaaatggtatgttagtggttt |
4896896 |
T |
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| Q |
127 |
ttagaactttgggtggatcaaagagcatatatatttttaaaactgatacaaaagatgatcnnnnnnncaacaaattattcactgtttggaggagcaattc |
226 |
Q |
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| T |
4896895 |
ttagaactttgggtggatcataaagcaaatatatttttaaaacaaatacaaaggatgaccaaaaaatcaacaaattattcactgtttggaagagcaattc |
4896796 |
T |
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| Q |
227 |
tc |
228 |
Q |
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|| |
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| T |
4896795 |
tc |
4896794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 209 - 274
Target Start/End: Complemental strand, 4908538 - 4908473
Alignment:
| Q |
209 |
tgtttggaggagcaattctcgaagggaatttagtgaacaagttgttgttaaggttcaaagtgagta |
274 |
Q |
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| T |
4908538 |
tgtttggaagaacaattctcaaagggaatttagtgaacaagttgttattgaggttcaaagtgagta |
4908473 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 202 - 274
Target Start/End: Complemental strand, 4902697 - 4902622
Alignment:
| Q |
202 |
tattcactgtttggaggagcaattctcgaagggaatttagtgaacaagttgt---tgttaaggttcaaagtgagta |
274 |
Q |
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| T |
4902697 |
tattcactctttggaagagcaattttcgaagggaatttattgaacaagttgttgttgttgaggttcaaagtgagta |
4902622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 4929941 - 4929887
Alignment:
| Q |
115 |
tgttagtggtttttagaactttgggtggatcaaagagcatatatatttttaaaac |
169 |
Q |
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| T |
4929941 |
tgttagtgatttttagaatattgggtggatcaaagagcctatatatttttaaaac |
4929887 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 23 - 150
Target Start/End: Complemental strand, 4902823 - 4902698
Alignment:
| Q |
23 |
ttctttttcttaatatatagccactctgattttggtaggatatgagaa-gttttgttcagatggtgatgttagagacgtgaaaagaaatggtatgttagt |
121 |
Q |
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|||||||||||| |||||||||| |||| ||||||||| | ||||||| ||||| | ||||||||||||| || ||| ||| | | ||| ||||||| |
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| T |
4902823 |
ttctttttcttagtatatagccattctgtttttggtagtaaatgagaaggttttcatgagatggtgatgttgaag--gtggaaa-ataaggtgtgttagt |
4902727 |
T |
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| Q |
122 |
ggtttttagaactttgggtggatcaaaga |
150 |
Q |
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| T |
4902726 |
gatttttagaactttgggaggatcaaaga |
4902698 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 274
Target Start/End: Complemental strand, 4896647 - 4896604
Alignment:
| Q |
230 |
aagggaatttagtgaacaagttgttgttaaggttcaaagtgagta |
274 |
Q |
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| T |
4896647 |
aagggaatttagtgaacaa-ttgttgttaaggttcaaagtgagta |
4896604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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