View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21650_low_11 (Length: 292)

Name: NF21650_low_11
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21650_low_11
NF21650_low_11
[»] chr7 (7 HSPs)
chr7 (1-274)||(47905979-47906252)
chr7 (1-274)||(47908751-47909024)
chr7 (8-114)||(47911153-47911259)
chr7 (171-233)||(47899483-47899545)
chr7 (13-60)||(47916063-47916110)
chr7 (9-114)||(47899309-47899414)
chr7 (169-229)||(47911326-47911386)
[»] chr5 (1 HSPs)
chr5 (81-222)||(39403205-39403346)
[»] chr3 (4 HSPs)
chr3 (9-100)||(41706173-41706264)
chr3 (40-99)||(35351697-35351756)
chr3 (8-96)||(35374793-35374881)
chr3 (9-91)||(35356839-35356921)
[»] chr1 (2 HSPs)
chr1 (171-232)||(31209493-31209554)
chr1 (9-84)||(31209653-31209728)


Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 47905979 - 47906252
Alignment:
Q  1 aaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47905979 aaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaac 47906078  T
Q  101 atgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaagacggaataagatttataaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47906079 atgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaaagacggaataagatttataaca 47906178  T
Q  201 aactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttctccct 274  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  47906179 aactcatgtaagccctgtggagcctcctcctcctccaccatcattgtgtcgacgtcatatcgaaggttctccct 47906252  T

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Target: chr7; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 47908751 - 47909024
Alignment:
Q  1 aaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47908751 aaataagggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaac 47908850  T
Q  101 atgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaagacggaataagatttataaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  47908851 atgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttagtagtagtattgtagatgaaagacagaataagatttataaca 47908950  T
Q  201 aactcatgtaagccctgtggagcctcctcctccaccaccatcattgtgtcaacgtcatatcgaaggttctccct 274  Q
    ||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||||||||||||||||||||    
T  47908951 aactcatgtaagccctgtggagcctcctcctcctccaccattattgtgtcgacgtcatatcgaaggttctccct 47909024  T

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Target: chr7; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 47911153 - 47911259
Alignment:
Q  8 ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatca 107  Q
    ||||||||||| ||||||| ||| ||||||||| |||||||| |||||||||| | |||| ||| |||| ||||||| |||||||||||| |  |||| |    
T  47911153 ggagcgacatacaggacagctagcgtttgaacggagccaaacgtcaatgcaattgagatggaaagtgtgagagcaaatagggagggtacggatgtgatta 47911252  T
Q  108 ttatctt 114  Q
    |||||||    
T  47911253 ttatctt 47911259  T

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Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 233
Target Start/End: Original strand, 47899483 - 47899545
Alignment:
Q  171 tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctcc 233  Q
    |||||||| |||||||||  || ||||||| |||||| |||||| ||||||||||||||||||    
T  47899483 tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctcc 47899545  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 47916063 - 47916110
Alignment:
Q  13 gacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaat 60  Q
    |||||| ||||||||||| |||| |||||||||||||| |||||||||    
T  47916063 gacatataggacagttagggtttaaacgaagccaaacaacaatgcaat 47916110  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 47899309 - 47899414
Alignment:
Q  9 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaacatgatcat 108  Q
    |||||||| | ||||||  ||| |||||||||||||||||| || || |||| | |||| ||| ||||||||||||  || ||| | ||||  |||||||    
T  47899309 gagcgacacaaaggacaactagggtttgaacgaagccaaacgtcgatacaattgagatggaaagtgtgggagcaaaacggaaggatgcgaatgtgatcat 47899408  T
Q  109 tatctt 114  Q
    ||||||    
T  47899409 tatctt 47899414  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 229
Target Start/End: Original strand, 47911326 - 47911386
Alignment:
Q  169 tgtagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctc 229  Q
    ||||||||||||||||||||   ||||||||| |||| | ||||||||||| | |||||||    
T  47911326 tgtagatgaaagacggaatagcttttataacagactcgtctaagccctgtgcaacctcctc 47911386  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 81 - 222
Target Start/End: Original strand, 39403205 - 39403346
Alignment:
Q  81 caaagagggagggtacgaacatgatcattatctttgaattcagtcaagcaaacggaacaagtttcttgttcagacttaatagtagtattgtagatgaaag 180  Q
    |||||||| | |||||||||  ||||||||||| ||||||||  ||||||||| ||||| ||||||| |||||||| | ||| |||||||||||||||||    
T  39403205 caaagaggtatggtacgaactcgatcattatctatgaattcaaccaagcaaactgaacacgtttctttttcagactaagtagcagtattgtagatgaaag 39403304  T
Q  181 acggaataagatttataacaaactcatgtaagccctgtggag 222  Q
    | || ||| |||||||||||||||||||||||||||||||||    
T  39403305 atggtatatgatttataacaaactcatgtaagccctgtggag 39403346  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 100
Target Start/End: Original strand, 41706173 - 41706264
Alignment:
Q  9 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaac 100  Q
    |||||||| ||||||||||||| || ||||||||||||| |||||||||| ||  |||||||| ||||||| || ||||| || ||||||||    
T  41706173 gagcgacagagaggacagttagcgtgtgaacgaagccaagcatcaatgcagtcaagatgaaaagtgtgggaacagagaggaagagtacgaac 41706264  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 40 - 99
Target Start/End: Complemental strand, 35351756 - 35351697
Alignment:
Q  40 gaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtacgaa 99  Q
    |||||||| ||||||||||| || |||| ||||||||||| |||||||||||||| ||||    
T  35351756 gaagccaagcatcaatgcaagcgagatggaaaatgtgggaacaaagagggagggtgcgaa 35351697  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 35374881 - 35374793
Alignment:
Q  8 ggagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggagggtac 96  Q
    |||||||||||||||||| ||||  |||  |||||||||| | |||||||| ||| |||| ||  ||||||| ||||||||||| ||||    
T  35374881 ggagcgacatagaggacaattaggttttttacgaagccaagcttcaatgcattcgagatggaagctgtgggaacaaagagggagtgtac 35374793  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 35356921 - 35356839
Alignment:
Q  9 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaagagggag 91  Q
    ||||||||||||||||| ||||  | |  | |||||||| ||||||||||| || |||| ||| ||||||| |||||||||||    
T  35356921 gagcgacatagaggacaattaggttgtttatgaagccaagcatcaatgcaagcgagatggaaagtgtgggaacaaagagggag 35356839  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 31209554 - 31209493
Alignment:
Q  171 tagatgaaagacggaataagatttataacaaactcatgtaagccctgtggagcctcctcctc 232  Q
    |||||||| |||||||||  || ||||||| |||||| |||||| |||||||||||||||||    
T  31209554 tagatgaaggacggaatagcatatataacagactcatctaagccatgtggagcctcctcctc 31209493  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 31209728 - 31209653
Alignment:
Q  9 gagcgacatagaggacagttagtgtttgaacgaagccaaacatcaatgcaatcgtgatgaaaaatgtgggagcaaa 84  Q
    |||||||| | ||||||| ||| ||| |||||||||||||| ||||| |||| | |||| ||| ||||||||||||    
T  31209728 gagcgacacaaaggacagctagggttagaacgaagccaaacgtcaatacaattgagatggaaagtgtgggagcaaa 31209653  T

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