View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21650_low_12 (Length: 275)
Name: NF21650_low_12
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21650_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 17 - 261
Target Start/End: Complemental strand, 4160258 - 4160014
Alignment:
| Q |
17 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatg |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
4160258 |
atgaacatgtccccaccaacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacaagtcaacttaggaaatg |
4160159 |
T |
|
| Q |
117 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4160158 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattgcaatctttcattgccaaatt |
4160059 |
T |
|
| Q |
217 |
aatcatttttgaatcactagccaaagcatcattgtataatgtatt |
261 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
4160058 |
aatcattttggaatcactagccaaagcatcattgtataatgtatt |
4160014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 250
Target Start/End: Original strand, 4171744 - 4171977
Alignment:
| Q |
17 |
atgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatg |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| |
|
|
| T |
4171744 |
atgaacatgtccccaccgacatatgtcaaattgttacttccacataaattctctacaacctttggacgatcaaaaacaacacatctcaacttaggatatg |
4171843 |
T |
|
| Q |
117 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||| ||||||||| |
|
|
| T |
4171844 |
tctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgaatccaacccctcaaacacaaaattgcaatctttcaatgccaaatt |
4171943 |
T |
|
| Q |
217 |
aatcatttttgaatcactagccaaagcatcattg |
250 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||| |
|
|
| T |
4171944 |
aatcattttggaatcactagccatagcatcattg |
4171977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 249
Target Start/End: Original strand, 4177368 - 4177599
Alignment:
| Q |
18 |
tgaacatgtccccaccaacatatgtcaaattgttatttccacataaattctctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgt |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||| || ||||| |||| ||||||||||| | ||| | |||||| |||| |||||||||||||| ||| || |
|
|
| T |
4177368 |
tgaacatgtccccaccaacataagtcaaattattgcttccagataagttctctacaacttgtggcctatcaaacacaatacatttcaacttaggaaaagt |
4177467 |
T |
|
| Q |
118 |
ctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaaacaccaaattacaatctttcattgccaaatta |
217 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||| ||||||| ||| |||||| || |
|
|
| T |
4177468 |
ctcacaaataattttaccagtggttccatttccaccaccaacatccacaattgattccaatccatcaaacacaaaatcacaatctctcaatgccaagttt |
4177567 |
T |
|
| Q |
218 |
atcatttttgaatcactagccaaagcatcatt |
249 |
Q |
| |
|
|||| ||| ||||||||||||| |||||||| |
|
|
| T |
4177568 |
atcaatttagaatcactagccattgcatcatt |
4177599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 59; Significance: 5e-25; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 69 - 239
Target Start/End: Complemental strand, 34343695 - 34343525
Alignment:
| Q |
69 |
ctacaacctttggacgatcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaat |
168 |
Q |
| |
|
||||||||| |||| ||||| ||||||||||||||||||||| ||| | |||||| ||||| || | || |||||| |||||||||||||||||||||| |
|
|
| T |
34343695 |
ctacaacctgtggaagatcataaacaacacatttcaacttaggaaaagcctcacatataattctagctgtggttccagttccaccaccaacatccacaat |
34343596 |
T |
|
| Q |
169 |
tgattccaacccctcaaacaccaaattacaatctttcattgccaaattaatcatttttgaatcactagcca |
239 |
Q |
| |
|
|| || | ||| ||||||||| | |||||| ||||| |||||||| | ||||| ||||||||||||| |
|
|
| T |
34343595 |
agaatcaatcccttcaaacaccttactacaatttttcaaagccaaattcaccatttgagaatcactagcca |
34343525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 34331071 - 34330971
Alignment:
| Q |
86 |
tcaaaaacaacacatttcaacttagaaaatgtctcacaaataatcttaccagttgttccatttccaccaccaacatccacaattgattccaacccctcaa |
185 |
Q |
| |
|
|||||||||| |||||| | ||||| ||| | |||||| ||||| ||| | || ||||||||||||||||||||||||||||| ||||| | |||||||| |
|
|
| T |
34331071 |
tcaaaaacaagacatttgaccttaggaaaagcctcacatataattttagccgtcgttccatttccaccaccaacatccacaatagattctatcccctcaa |
34330972 |
T |
|
| Q |
186 |
a |
186 |
Q |
| |
|
| |
|
|
| T |
34330971 |
a |
34330971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University