View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21650_low_14 (Length: 265)
Name: NF21650_low_14
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21650_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 248
Target Start/End: Complemental strand, 54058485 - 54058238
Alignment:
| Q |
1 |
aatatcatgtgtcactgcttttcgctttgcactatcgagaccaaggtctggcttagcctgtaattaggatactcagataaaacatcacatgctcactgac |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54058485 |
aatatcatgtgtcactgcttttcgctttgcactatcgagaccaaggtctggcttagcctgtaattaggatactcagataaaacatcacatgctcactgac |
54058386 |
T |
|
| Q |
101 |
caattaagaacttcaacattcactacttgttcaaatacactacatttcaaattttatcatcacattatgttaaccaaggatctaaatagccttgaaattt |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54058385 |
caattaagaacttaaacattcactacttgttcaaatacactacatttcaaattttatcatcacattatgttaaccaaggatctaaatagccttgaaattt |
54058286 |
T |
|
| Q |
201 |
ttatttatgaaagatagcctacaaatgatttcactaccatcgttgatc |
248 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54058285 |
ttacttatgaaagatagcctacaaatgatttcactaccatcgttgatc |
54058238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 4 - 173
Target Start/End: Complemental strand, 54459540 - 54459384
Alignment:
| Q |
4 |
atcatgtgtcactgcttttcgctttgcactatcgagaccaaggtctggcttagcctgtaa-ttaggatactcagataaaacatcacatgctcactgacca |
102 |
Q |
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| T |
54459540 |
atcaagtgtcaatgcttttcgctttgcaccatagagatcggggtctggcttagcctgcaaattgggatactcaaataaaacatcatatg----------- |
54459452 |
T |
|
| Q |
103 |
attaagaacttcaacattcactacttgttcaaatacactacatttcaaattttatcatcacattatgttaa |
173 |
Q |
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| T |
54459451 |
-ttaa--acttcaacattcactacatattcaaatacacaacatttcaaattttactatcacgttatcttaa |
54459384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 215 - 249
Target Start/End: Complemental strand, 54459363 - 54459329
Alignment:
| Q |
215 |
tagcctacaaatgatttcactaccatcgttgatct |
249 |
Q |
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| T |
54459363 |
tagcctacaaatgatttcaataccatcgttgatct |
54459329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 80 - 169
Target Start/End: Original strand, 15038933 - 15039022
Alignment:
| Q |
80 |
aaacatcacatgctcactgaccaattaagaacttcaacattcactacttgttcaaatacactacatttcaaattttatcatcacattatg |
169 |
Q |
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| T |
15038933 |
aaacatcacatgctcattgaccaattaagaacttcaacattcactacatgttcaaatacacaacatttcaaattttatcatcacattatg |
15039022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 15039052 - 15039119
Alignment:
| Q |
172 |
aaccaaggatctaaatagccttgaaatttttatttatgaaagatagcctacaaatgatttcactacca |
239 |
Q |
| |
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||||||||||| || || ||| ||||||||||| ||||||| |||||||||||| |||| ||||||| |
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| T |
15039052 |
aaccaaggatccaagtaacctacaaatttttattcatgaaaggtagcctacaaattattttactacca |
15039119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 15038875 - 15038933
Alignment:
| Q |
8 |
tgtgtcactgcttttcgctttgcactatcgagaccaaggtctggcttagcctgtaatta |
66 |
Q |
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|||||||| ||||||||||||||||||| ||||| | |||||||||||||| ||||| |
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| T |
15038875 |
tgtgtcaccgcttttcgctttgcactatagagactcatatctggcttagcctgcaatta |
15038933 |
T |
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