View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21650_low_9 (Length: 293)
Name: NF21650_low_9
Description: NF21650
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21650_low_9 |
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| [»] chr4 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 40115673 - 40115381
Alignment:
| Q |
1 |
cacatcactaatactcttgatgatcttcaccttactgctccctatcatggctcagacaaaattaccataggtgatggtactggacttcccattactcata |
100 |
Q |
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| T |
40115673 |
cacatcactaatactcttgatgatctgcaccttactgctccctatcatggctcagacaaaattaccataggtgatggtactggacttcccattactcata |
40115574 |
T |
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| Q |
101 |
ctggtaagataattttaccattgaaaagaagcactctccaccttcataaagttcttcatgttccgaatatcacttgcaagttattgtctgtctcacattt |
200 |
Q |
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| T |
40115573 |
ctggtaagataattttaccattgaaaagaagcactctccaccttcataaagttcttcatgttccaaatatcacttgcaagttattgtctgtctcacattt |
40115474 |
T |
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| Q |
201 |
atgcaaaactaaccttatatccattgaannnnnnnctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgca |
293 |
Q |
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| T |
40115473 |
atgcaaaactaaccctatatccattgaatttttttctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgca |
40115381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 206 - 293
Target Start/End: Complemental strand, 9007300 - 9007213
Alignment:
| Q |
206 |
aaactaaccttatatccattgaannnnnnnctgattattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgca |
293 |
Q |
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| T |
9007300 |
aaactaaccctatttccattgaatttttttctgattgttttttggtgaaggatttgaagacaaaggagcctctcctcaaaggactgca |
9007213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 293
Target Start/End: Original strand, 3017100 - 3017254
Alignment:
| Q |
139 |
caccttcataaagttcttcatgttccgaatatcacttgcaagttattgtctgtctcacatttatgcaaaactaaccttatatccattgaannnnnnnctg |
238 |
Q |
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||||||| ||||| |||||||| || |||| ||||||| ||||| |||||||| | |||||||| ||||||| || || |||||| || |
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| T |
3017100 |
caccttcccaaagtccttcatgtccctcatatttcttgcaaattattatctgtctccaacttatgcaagactaacccaatttctattgaattctttcatg |
3017199 |
T |
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| Q |
239 |
attattttttggtgaaggatttgaagacaagggagcctcttctaaaaggattgca |
293 |
Q |
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| T |
3017200 |
attattacttggtaaaggacttgaagacaagggctcctcttctaaaaggattgca |
3017254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 9038459 - 9038424
Alignment:
| Q |
236 |
ctgattattttttggtgaaggatttgaagacaaggg |
271 |
Q |
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|||||| ||||||||||||||||||||||||||||| |
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| T |
9038459 |
ctgatttttttttggtgaaggatttgaagacaaggg |
9038424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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