View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21651_high_3 (Length: 238)

Name: NF21651_high_3
Description: NF21651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21651_high_3
NF21651_high_3
[»] chr5 (2 HSPs)
chr5 (1-222)||(41741057-41741278)
chr5 (153-222)||(22477307-22477376)
[»] chr8 (1 HSPs)
chr8 (1-222)||(29022662-29022883)
[»] chr2 (3 HSPs)
chr2 (1-222)||(23357677-23357898)
chr2 (153-222)||(5921036-5921105)
chr2 (153-222)||(36307399-36307468)
[»] chr1 (2 HSPs)
chr1 (1-222)||(292184-292405)
chr1 (153-222)||(35574124-35574193)
[»] chr4 (4 HSPs)
chr4 (1-222)||(28987766-28987958)
chr4 (153-222)||(15606499-15606568)
chr4 (153-222)||(15606851-15606920)
chr4 (157-222)||(16561517-16561582)
[»] scaffold0961 (1 HSPs)
scaffold0961 (153-222)||(737-806)
[»] chr3 (2 HSPs)
chr3 (153-222)||(16250852-16250921)
chr3 (160-222)||(23493490-23493552)
[»] chr7 (1 HSPs)
chr7 (153-222)||(3750169-3750238)
[»] chr6 (2 HSPs)
chr6 (153-222)||(16543598-16543667)
chr6 (153-222)||(17834469-17834538)


Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41741057 - 41741278
Alignment:
Q  1 ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgcagaaggaaattcag 100  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  41741057 ctatctcacaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcgacttgcagaaggaaattcag 41741156  T
Q  101 atccttgtgattgaaattcagatatgtgtggttgagttccaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || | |||||    
T  41741157 atccttgtgattgaaattcagatatgtgtggttgagttccaaggtaaaatacaaggttgaaatgatgtgaagtaatgaaaggaagaaagtttgtaagaaa 41741256  T
Q  201 gagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||    
T  41741257 gagaaattgaaggcttgaattt 41741278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 22477376 - 22477307
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatg-aaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||||| ||||||||||| | |  |||||||| |||||||||||||||||||    
T  22477376 aaggttgaagtgatgtgaagtaatgaaaaggaagaaa-actgggagaaagaaaaattgaaggcttgaattt 22477307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 29022883 - 29022662
Alignment:
Q  1 ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgcagaaggaaattcag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29022883 ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgcagaaggaaattcag 29022784  T
Q  101 atccttgtgattgaaattcagatatgtgtggttgagttccaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaa 200  Q
    |||  |||| |||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  29022783 atctgtgtggttgatattcagatctgtgtggttgagtttcaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaaggttgtgagaaa 29022684  T
Q  201 gagaaattgaaggcttgaattt 222  Q
    |||||||||||| |||||||||    
T  29022683 gagaaattgaagacttgaattt 29022662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 23357898 - 23357677
Alignment:
Q  1 ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgcagaaggaaattcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23357898 ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttacagaaggaaattcag 23357799  T
Q  101 atccttgtgattgaaattcagatatgtgtggttgagttccaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaa 200  Q
    |||  |||| ||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  23357798 atctgtgtggttgaaattcagatctatgtggttgagtttcaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaaggttgtgagaaa 23357699  T
Q  201 gagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||    
T  23357698 gagaaattgaaggcttgaattt 23357677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 5921036 - 5921105
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatg-aaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||||| ||||||||||| | |  |||||||| |||||||||||||||||||    
T  5921036 aaggttgaagtgatgtgaagtaatgaaaaggaagaaa-actaggagaaagaaaaattgaaggcttgaattt 5921105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 36307468 - 36307399
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatg-aaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||||| ||||||||||| | |  |||||||| |||||||||||||||||||    
T  36307468 aaggttgaagtgatgtgaagtaatgaaaaggaagaaa-actaggagaaagaaaaattgaaggcttgaattt 36307399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 292184 - 292405
Alignment:
Q  1 ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgcagaaggaaattcag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  292184 ctatctcgcaataatttcattccattctttctaccatccttattaaataaactgaaagcttatttgtgcaatgaccttcaacttgcaaaaggaaattcag 292283  T
Q  101 atccttgtgattgaaattcagatatgtgtggttgagttccaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaa 200  Q
    |||  |||| ||||||||| ||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||    
T  292284 atctgtgtggttgaaattctgatctgtctgattgagtttcaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaaggttgtgagaaa 292383  T
Q  201 gagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||    
T  292384 gagaaattgaaggcttgaattt 292405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 35574124 - 35574193
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatg-aaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||||| ||||||||||| | |  |||||||| |||||||||||||||||||    
T  35574124 aaggttgaagtgatgtgaagtaatgaaaaggaagaaa-actgggagaaagaaaaattgaaggcttgaattt 35574193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 28987766 - 28987958
Alignment:
Q  1 ctatctcgcaataatttcattccattctttctaccatccttattgaataaactgaaagcttctttgtgcaatgaccttcaacttgcagaaggaaattcag 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28987766 ctatctctcaataatttcattccattctttctaccatccttattgaataagctgaaagcttccttgtgcaatgaccttcaacttgcagaaggaaattcag 28987865  T
Q  101 atccttgtgattgaaattcagatatgtgtggttgagttccaaggtaaaatacaaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaa 200  Q
    |||                     |||||||||||||| ||||||||||||||||||||||||||||        |||||||||||||| || |||||||    
T  28987866 atc---------------------tgtgtggttgagtttcaaggtaaaatacaaggttgaagtgatg--------tgaaaggaagaaagcttgtgagaaa 28987936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 15606568 - 15606499
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatg-aaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||||| ||||||||||| | | |||||||||||| ||||||||||||||||    
T  15606568 aaggttgaagtgatgtgaagtaatgaaaaggaagaaa-actgtgagaaagagaatttgaaggcttgaattt 15606499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 15606920 - 15606851
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatg-aaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||||| ||||||||||| | | |||||||||||| ||||||||||||||||    
T  15606920 aaggttgaagtgatgtgaagtaatgaaaaggaagaaa-actgtgagaaagagaatttgaaggcttgaattt 15606851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 157 - 222
Target Start/End: Complemental strand, 16561582 - 16561517
Alignment:
Q  157 ttgaagtgatgtgaagtaatgaaa-ggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    |||||||||||||||||||| ||| |||||||| | | ||||||||||| |||||||||||||||||    
T  16561582 ttgaagtgatgtgaagtaataaaaaggaagaaa-actgtgagaaagagagattgaaggcttgaattt 16561517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0961 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0961
Description:

Target: scaffold0961; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 737 - 806
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatg-aaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||    
T  737 aaggttgaagtgatgtgaagtaatgaaaaggaagaaa-attgtgagaaagagaaattgaaggcttgaattt 806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 16250852 - 16250921
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    |||||||||||||||||||||||| ||||||| |||  || |||||||||||||||||||||||||||||    
T  16250852 aaggttgaagtgatgtgaagtaattaaaggaaaaaaagttgtgagaaagagaaattgaaggcttgaattt 16250921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 160 - 222
Target Start/End: Complemental strand, 23493552 - 23493490
Alignment:
Q  160 aagtgatgtgaagtaatgaaa-ggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||| |||||||| | | |||||||||||||||||||||||||||||    
T  23493552 aagtgatgtgaagtaatgaaaaggaagaaa-actatgagaaagagaaattgaaggcttgaattt 23493490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 3750238 - 3750169
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    ||||||||||||||||||||||| ||||  |||||| ||| ||||||||||||||||||||||| |||||    
T  3750238 aaggttgaagtgatgtgaagtaacgaaacaaagaaaaattgtgagaaagagaaattgaaggcttaaattt 3750169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 153 - 222
Target Start/End: Complemental strand, 16543667 - 16543598
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatgaaaggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    |||||||||||||||||||||||||||| |||  || | |  |||||||| |||||||||||||||||||    
T  16543667 aaggttgaagtgatgtgaagtaatgaaaagaaagaaaactgggagaaagaaaaattgaaggcttgaattt 16543598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 153 - 222
Target Start/End: Original strand, 17834469 - 17834538
Alignment:
Q  153 aaggttgaagtgatgtgaagtaatgaaa-ggaagaaagattctgagaaagagaaattgaaggcttgaattt 222  Q
    |||||||||||||||||||| ||  ||| |||||||| | | |||||||||||||||||||||||||||||    
T  17834469 aaggttgaagtgatgtgaagaaacaaaaaggaagaaa-actgtgagaaagagaaattgaaggcttgaattt 17834538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University