View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21651_high_4 (Length: 227)
Name: NF21651_high_4
Description: NF21651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21651_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 20 - 227
Target Start/End: Complemental strand, 52728373 - 52728157
Alignment:
| Q |
20 |
aaggagggttagattaaagaattgggaaaaattcaaacatcaaagaaggaagctgaaccaagaaataacacaagacaactcaagtgcaatctttggaaga |
119 |
Q |
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| T |
52728373 |
aaggagggttagattaaagaattgggaaaaattcaaacatcaaagaaggaagctgaaccaagaaataacacaagacaactcaagtgcaatctttggaaga |
52728274 |
T |
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| Q |
120 |
aaatgcaa------aacacta---cagcagagaacagtgttctaaaaccatgtgaattgctctttaccattttactaaagcatttttatgttggagtgag |
210 |
Q |
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| T |
52728273 |
aaatgcaaaatttcaacactacagcagcagagaacagtgttctaaaaccatgtgaattgctctttaccattttactaaagcatttttatgttggagtgag |
52728174 |
T |
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| Q |
211 |
aagaataaataaaatat |
227 |
Q |
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||||||||||||||||| |
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| T |
52728173 |
aagaataaataaaatat |
52728157 |
T |
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