View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21651_low_2 (Length: 308)
Name: NF21651_low_2
Description: NF21651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21651_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 3057091 - 3057385
Alignment:
| Q |
1 |
tgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057091 |
tgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagcta |
3057190 |
T |
|
| Q |
101 |
agattggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccgtaatatttgca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057191 |
agattggcaacttgtgctaatacttgttgtgctcttttctaagattgacaacttgtgctgatacttgttgtgctcttttaagtgtaccgtaatatttgca |
3057290 |
T |
|
| Q |
201 |
tttatgtttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgtacccctcaatcatatgttgttcatctc |
295 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3057291 |
tttatttttgtgtatcaagatgttgtttccatattatggtaggttccaatattagttcatctccacgtacccctcaatcatatgttgttcatctc |
3057385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 3036223 - 3036348
Alignment:
| Q |
1 |
tgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagtctgtaagcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |||| | |
|
|
| T |
3036223 |
tgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcaccaattagtattcaatattctctaaattaataagttgggaagcaa |
3036322 |
T |
|
| Q |
101 |
agattggcaacttgtgctaatacttg |
126 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3036323 |
agattggcaacttgtgctaatacttg |
3036348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 3048436 - 3048326
Alignment:
| Q |
12 |
tgcttgaaggtactgttgaagtgcaagttccaccat--acccctcacaaattagtattcaatattctctaaattaataagtctgtaagctaagattggca |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |||| |||||||||| |||||||||||||||||||| | |||||| |||||||||| |
|
|
| T |
3048436 |
tgcttgaaggtactgttgaagtgcaagttccaccatacacccttcaccaattagtattgaatattctctaaattaataactttgtaag-gaagattggca |
3048338 |
T |
|
| Q |
110 |
acttgtgctaat |
121 |
Q |
| |
|
||||||||||| |
|
|
| T |
3048337 |
gcttgtgctaat |
3048326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 3069821 - 3069732
Alignment:
| Q |
1 |
tgtggtacatatgcttgaaggtactgttgaagtgcaagttccaccatacccctcacaaattagtattcaatattctctaaattaataagt |
90 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| ||| | ||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
3069821 |
tgtgatacatatgcttgaaggtactgttgaagtgcaagctccgttaaacccctcaccgtttagtattcaatattctctaaattaataagt |
3069732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 141 - 252
Target Start/End: Original strand, 3036322 - 3036432
Alignment:
| Q |
141 |
aagattgacaacttgtgctgatacttgttgtgctctttt-aagtgtaccgt--aatatttgcatttatgtttgtgtatcaagatgttgtttccatattat |
237 |
Q |
| |
|
||||||| ||||||||||| ||||||| |||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
3036322 |
aagattggcaacttgtgctaatacttgc---gctctttttaagtgtaccgtgtaatatttgcatttatgtttgtgt-tcaagatgtgatttccatattaa |
3036417 |
T |
|
| Q |
238 |
ggtaggttccaatat |
252 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
3036418 |
ggtaggtcccaatat |
3036432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University