View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21651_low_5 (Length: 230)

Name: NF21651_low_5
Description: NF21651
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21651_low_5
NF21651_low_5
[»] chr8 (2 HSPs)
chr8 (16-225)||(43202495-43202704)
chr8 (144-212)||(31845424-31845492)
[»] chr7 (1 HSPs)
chr7 (144-225)||(43441757-43441838)
[»] chr4 (2 HSPs)
chr4 (144-218)||(26630206-26630280)
chr4 (149-218)||(36845813-36845882)
[»] chr1 (1 HSPs)
chr1 (144-204)||(48527947-48528007)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 16 - 225
Target Start/End: Complemental strand, 43202704 - 43202495
Alignment:
Q  16 tcaaaggaaatagatgcaggaaggaggatcctttaatgtgagatgtatctatttccttcttcattctctctctcagcatgacccannnnnnnnggaataa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||        ||||||     
T  43202704 tcaaaggaaatagatgcaggaaggaggatcctttaatgtgagatgtatccatttccttcttcattctctctctcagcatgacccattttttttggaatac 43202605  T
Q  116 cgtggcacatgagcttgctgaattagtggtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaattgatggtgttg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||    
T  43202604 cgtggcacatgagcttgctgaattagtggtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaatcgatgatgatg 43202505  T
Q  216 atgatgatgt 225  Q
    ||||||||||    
T  43202504 atgatgatgt 43202495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 144 - 212
Target Start/End: Original strand, 31845424 - 31845492
Alignment:
Q  144 gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaattgatggtg 212  Q
    |||| |||||| |||| |||||||||||||||||||| |||||| |||||||||||||||| |||||||    
T  31845424 gtgtgtttgatgatggagatgagttttaattgaattagtggtgtttggaattgatagaaatcgatggtg 31845492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 43441838 - 43441757
Alignment:
Q  144 gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaattgatggtgttgatgatgatgt 225  Q
    |||| ||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||  |||||| ||||| ||||||    
T  43441838 gtgtgtttgataatggagatgagttttaattgaattagtggtgtttggaattgatagaaatccatggtgatgatgttgatgt 43441757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 144 - 218
Target Start/End: Complemental strand, 26630280 - 26630206
Alignment:
Q  144 gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaattgatggtgttgatg 218  Q
    |||| |||||| |||| |||||||||||||||||||| |||||| |||||||||||||||| ||||||| |||||    
T  26630280 gtgtgtttgatgatggagatgagttttaattgaattagtggtgtttggaattgatagaaatcgatggtgatgatg 26630206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 36845882 - 36845813
Alignment:
Q  149 tttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaattgatggtgttgatg 218  Q
    ||||||||||| |||||||||||||||||||| || ||| || |||||||||||||  |||||| |||||    
T  36845882 tttgataatggagatgagttttaattgaattagtgatgtttgtaattgatagaaatccatggtgatgatg 36845813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 48528007 - 48527947
Alignment:
Q  144 gtgtctttgataatggtgatgagttttaattgaattaatggtgtatggaattgatagaaat 204  Q
    |||| |||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||    
T  48528007 gtgtgtttgataatggtgatgagttttaattgaattagtggggttaggaattgatagaaat 48527947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University