View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21652_low_3 (Length: 327)
Name: NF21652_low_3
Description: NF21652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21652_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 311
Target Start/End: Complemental strand, 12005034 - 12004740
Alignment:
| Q |
17 |
atgaaattaatatctggaatacatagacagagtacaaaatccaacataacttcttttgttgcagatgcaaatgatattgaaaaggaaggagattgctgac |
116 |
Q |
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| T |
12005034 |
atgaaattaatatctggaatacatagacagagtacaaaatccaacataacttcttttgttgcagatgcaaatgatattgaaaaggaaggagattgctgac |
12004935 |
T |
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| Q |
117 |
agattaaacaaaaagcttgtatgtgcgaactttcattgagaaaagatcttgcaccgtacaaataacatgaaattcaatgaagccatacatacatataaat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12004934 |
agattaaacaaaaagcttgtatgtgcgaactttcattgagaaaagatcttgcaccgtacaaataacatgaaattcaatgaagccatacatacatataaat |
12004835 |
T |
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| Q |
217 |
cagcctcatcattagtacatattaatcaatcagatttaaatattgacgattattcaacgttgatattgtcttggttttagtgtctgtgatattgt |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12004834 |
cagcctcatcattagtacatattaatcaatcagatttaaatattgacgattattcaacgttgatattgtcttggttttagtgtctgtgatattgt |
12004740 |
T |
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