View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21652_low_5 (Length: 238)
Name: NF21652_low_5
Description: NF21652
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21652_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 3 - 227
Target Start/End: Original strand, 4026871 - 4027092
Alignment:
| Q |
3 |
acccaatatttatatgttcaataatcaagttgtatttctttgaataaatatttgaaggcaacaaatatcgtatttgatctctcaagaataaaatannnnn |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
4026871 |
acccaatatttatatgttcaataatcaagttgtatttctttgaataaat---taaaggcaacaaatatcgtatttgatctctcaagaataaaatattgtg |
4026967 |
T |
|
| Q |
103 |
nnnnnnnnnnnnnnnnnnactcaactgatccaatatgcactttacgaccaaagctttctagatattcaaagtaaaagatgcgtggtcttattcttctatg |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4026968 |
tttgttgttttgttttgtactcaactgatccaatatgcactttacgaccaaagctttctagatattcaaagtaaaagatgcgtggtcttattcttctatg |
4027067 |
T |
|
| Q |
203 |
tactacaagtctttgtcttcttctt |
227 |
Q |
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||||||||||||||||||||||||| |
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| T |
4027068 |
tactacaagtctttgtcttcttctt |
4027092 |
T |
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