View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21653_low_1 (Length: 412)
Name: NF21653_low_1
Description: NF21653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21653_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 4031003 - 4031407
Alignment:
| Q |
1 |
aatgcattcattttgcatctaaaaccattttctataattagaacaaaagtttgtacaagtcacaataaaactacggtatctgtccccactcttgattaaa |
100 |
Q |
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| T |
4031003 |
aatgcattcattttgcatctaaaaccattttctataattagaacaaaagtttgtacaattcacaataaaactacggtatctgtccccactcttgattaaa |
4031102 |
T |
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| Q |
101 |
tggacaaggttttaaggaaaatgataaatatagcgaaggaaacaatcatgaagcaattgcgaataagtgttattggttgccaatccccaccactgggtga |
200 |
Q |
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| T |
4031103 |
tggacaaggttttaaggaaaatgataaatatagcgaaggaaacaatcatgaagcaattgcaaataagtgttattggttgccaatccccacgactgggtga |
4031202 |
T |
|
| Q |
201 |
tttcagcaaattccaggactgaagtgattcca------------ttttatcaaacacacgcccgcgagatttcacaaaaacaaattcgctatatatagca |
288 |
Q |
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| T |
4031203 |
tttcagcaaattccaggactgaagtgattccatccgttatgtagttttatcaaacacgcgctcgcgagatttcacaaaaacaaattcgctatatatagca |
4031302 |
T |
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| Q |
289 |
aatcctcttcttaaataatagccgtgttgcagttgcaattttttacatgtactaaaattgggttatatacaaattatggtcacaattgcaatcacaaagt |
388 |
Q |
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| T |
4031303 |
aatcctcttcttaaataatagccgtgttgcagttgcaattttttatatgtactaaaattgggttatatacaaattatggtcacaattgcaatcacaaagt |
4031402 |
T |
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| Q |
389 |
aatcg |
393 |
Q |
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| T |
4031403 |
aatcg |
4031407 |
T |
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