View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21653_low_3 (Length: 240)
Name: NF21653_low_3
Description: NF21653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21653_low_3 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 7668448 - 7668209
Alignment:
| Q |
1 |
cagagaatatgattctgcagagggatatatatgatagagacattatcaacacttggggaattgggagagttactttattaggagatgcagcacatccaat |
100 |
Q |
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| T |
7668448 |
cagagaatatgattctgcagagggatatatatgatagagacattatcaacacttggggaattgggagagttactttattaggagatgcagcacatccaat |
7668349 |
T |
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| Q |
101 |
gcaaccaaatcttggtctagggggatgtatggcaattgaggtatgttatatcaacttataatttagccctatcactggtttttacttaaaattatcttat |
200 |
Q |
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| T |
7668348 |
gcaaccaaatcttggtctagggggatgtatggcaattgaggtatgttatatcaacttataatttagccctatcacttgtttttacttaaaaatatcttat |
7668249 |
T |
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| Q |
201 |
tttctattattcataataagatcttgcttatgattcagaa |
240 |
Q |
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| T |
7668248 |
tttctattattcataataagatcttgcttatgattcagaa |
7668209 |
T |
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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 36 - 68
Target Start/End: Original strand, 32789586 - 32789618
Alignment:
| Q |
36 |
agagacattatcaacacttggggaattgggaga |
68 |
Q |
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| T |
32789586 |
agagacattatcaacacttggggaattgggaga |
32789618 |
T |
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