View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21653_low_4 (Length: 223)
Name: NF21653_low_4
Description: NF21653
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21653_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 48925036 - 48924829
Alignment:
| Q |
1 |
attgacttcgttaggaagcatattgcttcaaatttcagtaatttgggctgtaacccttgaaaatgttctgtggatacttatctacataaatctgtgtaac |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48925036 |
attgactttgttaggaagcatattgcttcaaatttcagtaatttgggctgtaacccttgaaaatgttctgtggatacttatctacataaatctgtgtaac |
48924937 |
T |
|
| Q |
101 |
cattgaaaaggtgctttattttcaagatggacactccttttctgaattgttgtttttaaccgatgttgctcataggaaaagtggacttcttgtgtttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48924936 |
cattgaaaaggtgctttattttcaagatggacactccttttctgaattgttgtttttaaccgatgttgctcataggaaaagtggacttcttgtgtttgtt |
48924837 |
T |
|
| Q |
201 |
ttttattg |
208 |
Q |
| |
|
|||||||| |
|
|
| T |
48924836 |
ttttattg |
48924829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University