View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21654_high_13 (Length: 266)

Name: NF21654_high_13
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21654_high_13
NF21654_high_13
[»] chr3 (5 HSPs)
chr3 (18-266)||(53423562-53423809)
chr3 (18-140)||(53308312-53308434)
chr3 (75-127)||(48374435-48374487)
chr3 (81-140)||(53431280-53431339)
chr3 (82-127)||(26095761-26095806)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 53423562 - 53423809
Alignment:
Q  18 atttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53423562 atttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatc 53423661  T
Q  118 gggctacaaaagaaagaagtgtttgctatgtttagtgatgagtgtaaaatgatatctatttatgattctatctttattttgtgtatcctttaccttgaga 217  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  53423662 gggctacaaaagaaagaattgtttgctatgtttagtgatgagtgtaaaatgatatctatttatgattctatctttattttgtgtatcc-ttaccttgaga 53423760  T
Q  218 atattcttagagagtgttgaaggccctctagatgaaaagaatgcaacca 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53423761 atattcttagagagtgttgaaggccctctagatgaaaagaatgcaacca 53423809  T

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Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 53308312 - 53308434
Alignment:
Q  18 atttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatc 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  53308312 atttaaagttatatggtgagggctttttcccttttggaacatcagttacatcattaccaatccatgatgcaagaatggcaacacctggtgctgcaatatc 53308411  T
Q  118 gggctacaaaagaaagaagtgtt 140  Q
     ||||||||||||||||| ||||    
T  53308412 aggctacaaaagaaagaattgtt 53308434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 48374487 - 48374435
Alignment:
Q  75 caatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa 127  Q
    ||||| ||||||||||||||| ||||||||||||||||||||| |||||||||    
T  48374487 caatccatgctgcaagaatggtaacacctggtgctgcaatatcaggctacaaa 48374435  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 53431280 - 53431339
Alignment:
Q  81 atgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgtt 140  Q
    ||||||||||||||  ||||||||||||||| |||||||||||  ||| |||||| ||||    
T  53431280 atgctgcaagaatgttaacacctggtgctgcgatatcgggctaacaaaaaaagaattgtt 53431339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 26095761 - 26095806
Alignment:
Q  82 tgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa 127  Q
    |||||||| ||||  ||||||||||||||||||||| |||||||||    
T  26095761 tgctgcaacaatgttaacacctggtgctgcaatatcaggctacaaa 26095806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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