View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_high_3 (Length: 659)
Name: NF21654_high_3
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 514; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 514; E-Value: 0
Query Start/End: Original strand, 40 - 599
Target Start/End: Complemental strand, 36879781 - 36879223
Alignment:
| Q |
40 |
aaaaatattaattatatgtcaaaatatagatgttaccctcttaaaatcttcaaaaatcaactcagaaacatactactctaagagatcaaaattgaaggtt |
139 |
Q |
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| T |
36879781 |
aaaaatattaattatatgtcaaaatatagatgttaccctcttaaaatcttcaaaaatcaactcagaaacatactactctaagagatcaaaattgaaggtt |
36879682 |
T |
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| Q |
140 |
tatttcactctacccagtcaagcagccctgtcataagcctccagagcattattaattcttctaaccacaactagagtggtgtgcagaaagacacattata |
239 |
Q |
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| T |
36879681 |
tatttcactctacccagtcaagcagccctgtcataagcctccagagcattattaattcttctaaccacaactagagcggtgtgcagaaagacacattata |
36879582 |
T |
|
| Q |
240 |
acctccacaaatatcattcaccctcaaggccaaccaactcattaattagcatcagtttgctcaatgacgtctaccacggtattgttttcaaaatggcatt |
339 |
Q |
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| T |
36879581 |
acctccacaaatatcattcaccctcaaggccaaccaactcattaattagcatcagtttgctcaatgacgtctaccacggtattgttttcaaaatggcatt |
36879482 |
T |
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| Q |
340 |
ggctccaaactgaccagactatataggttgtatcttaattttgagtcaaccattcatttacaccagttggatcttaattctatcattaaaataaaatttc |
439 |
Q |
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| T |
36879481 |
ggctccaaactgaccagac--tataggttgtatcttaattttgagtcaaccattcatttacaccagttggatcttaattctatcattaaaataaaatttc |
36879384 |
T |
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| Q |
440 |
tatgacc-ttttnnnnnnnntcaaatctgaaaaattaacctattgaaatctttattttcattgaggtcaaattagacctgttccataaacaccagtcaca |
538 |
Q |
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||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36879383 |
tatgacctttttttaaaaaatcaaatctgaaaaattaacctattgaaatctttattttcattgaggtcaaattagacctgttccataaacaccagtcaca |
36879284 |
T |
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| Q |
539 |
tccaataacaaaataacacctattataaaattaaatctcactataaacttaacaagcatat |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36879283 |
tccaataacaaaataacacctattataaaattaaatctcactataaacttaacaagcatat |
36879223 |
T |
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