View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21654_high_4 (Length: 641)

Name: NF21654_high_4
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21654_high_4
NF21654_high_4
[»] chr8 (6 HSPs)
chr8 (305-641)||(14223004-14223340)
chr8 (61-243)||(14222761-14222941)
chr8 (435-607)||(14227340-14227512)
chr8 (403-567)||(14229623-14229784)
chr8 (319-359)||(11815810-11815850)
chr8 (123-155)||(14226736-14226768)
[»] chr3 (4 HSPs)
chr3 (305-387)||(16151808-16151890)
chr3 (305-348)||(16152731-16152774)
chr3 (196-241)||(16151954-16151997)
chr3 (570-615)||(17355786-17355831)
[»] chr2 (2 HSPs)
chr2 (318-354)||(18638544-18638580)
chr2 (313-359)||(42205873-42205919)
[»] chr5 (2 HSPs)
chr5 (313-362)||(9878067-9878116)
chr5 (313-362)||(9897917-9897966)
[»] scaffold0024 (1 HSPs)
scaffold0024 (313-359)||(18146-18192)
[»] chr6 (1 HSPs)
chr6 (312-350)||(10341030-10341068)
[»] chr7 (1 HSPs)
chr7 (571-623)||(41006851-41006903)
[»] chr1 (1 HSPs)
chr1 (395-427)||(40158374-40158406)


Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 305 - 641
Target Start/End: Original strand, 14223004 - 14223340
Alignment:
Q  305 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggacgccgaaaacgtatttga 404  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  14223004 gaaatgcaacacctgacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcagacgccgaaaacgtatttga 14223103  T
Q  405 tcagaagtgtctgtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgta 504  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223104 tcagaagtgtcggtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgta 14223203  T
Q  505 gtttgattcttgaggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccat 604  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  14223204 gtttgattcttgaggtctaggttttcttagatcacaatttgattgcccaaaattgttgtcgatagcagaaggccaaaaatacgccatttaaacattccat 14223303  T
Q  605 tgcggactatggcaccaccgccgtgggttactcttca 641  Q
    |||||||||||||||||||||||||| ||||||||||    
T  14223304 tgcggactatggcaccaccgccgtggtttactcttca 14223340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 61 - 243
Target Start/End: Original strand, 14222761 - 14222941
Alignment:
Q  61 tgaaactaaaaaacccaccaaaaccctttcttcattttctcccaaatgttcttccattcgcaccaggtatttttctctttctcttcatcttcattatcgc 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14222761 tgaaactaaaaaacccaccaaaaccctttcttcattttctcccaaatgttcttccattcgctccaggtatttttctctttctcttcatcttcattatcgc 14222860  T
Q  161 atttacttttatctgttgtttggttgatcaataagatgttttcggaatatgggatttcacaccttactatactgaaagcttcg 243  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  14222861 ttttacttttatctgttgtttggttgatcaataagatgttttcggaatatgggatttcacaccttac--tactgaaagcttcg 14222941  T

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Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 435 - 607
Target Start/End: Original strand, 14227340 - 14227512
Alignment:
Q  435 tattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag 534  Q
    |||||||||||||||||| ||||||||||||| ||||||| || |||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  14227340 tattcattttgatgattgctggatgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag 14227439  T
Q  535 atcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccattgc 607  Q
    ||||||||||||||||| | || |||| | ||| || ||||||||||||| || ||| ||||||| |||||||    
T  14227440 atcacactttgattgccgataagtgtttttgatggctgaaggccaaaaatccgtcatataaacatgccattgc 14227512  T

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Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 403 - 567
Target Start/End: Original strand, 14229623 - 14229784
Alignment:
Q  403 gatcagaagtgtctgtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttg 502  Q
    ||||||||||||| ||||||||||||| |||| |   ||||||||| ||||||| |  |||||| ||||||||||||||||| |||||||||||||||||    
T  14229623 gatcagaagtgtcagtgctatagagataatataa---attttgatggttgttgggtatctttcacttgactttctcctttattaggacaatgtgtctttg 14229719  T
Q  503 tagtttgattcttgaggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgat 567  Q
    |||||||||||| |||||||||||||  || |||||| |||||||| ||| ||| |||| |||||    
T  14229720 tagtttgattctcgaggtttaggtttgttttgatcactctttgattccccgaaactgttctcgat 14229784  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 11815810 - 11815850
Alignment:
Q  319 gacacgacactgacatgtcgacaccaataatattttgagaa 359  Q
    ||||||||||||||| || ||||||||||||| ||||||||    
T  11815810 gacacgacactgacacgttgacaccaataataatttgagaa 11815850  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 14226736 - 14226768
Alignment:
Q  123 ccaggtatttttctctttctcttcatcttcatt 155  Q
    |||||||||||||||||||| ||||||||||||    
T  14226736 ccaggtatttttctctttcttttcatcttcatt 14226768  T

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Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 16151890 - 16151808
Alignment:
Q  305 gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggac 387  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  16151890 gaaatgcaacaccggacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcggac 16151808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 16152774 - 16152731
Alignment:
Q  305 gaaatgcaacaccggacacgacactgacatgtcgacaccaataa 348  Q
    ||||||||||| ||||||||||||||||||||||||||||||||    
T  16152774 gaaatgcaacatcggacacgacactgacatgtcgacaccaataa 16152731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 16151997 - 16151954
Alignment:
Q  196 atgttttcggaatatgggatttcacaccttactatactgaaagctt 241  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||    
T  16151997 atgtttttggaatatgggatttcacaccttac--tactgaaagctt 16151954  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 615
Target Start/End: Complemental strand, 17355831 - 17355786
Alignment:
Q  570 cggaaggccaaaaatacgccatttaaacattccattgcggactatg 615  Q
    ||||||||||||||| |||||| ||||||| ||||||||| |||||    
T  17355831 cggaaggccaaaaattcgccatataaacatgccattgcggcctatg 17355786  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 18638544 - 18638580
Alignment:
Q  318 ggacacgacactgacatgtcgacaccaataatatttt 354  Q
    |||||||||||||||||||||||||||||||||||||    
T  18638544 ggacacgacactgacatgtcgacaccaataatatttt 18638580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 42205919 - 42205873
Alignment:
Q  313 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 359  Q
    ||||||||||||||| ||||||| | |||||||||||| ||||||||    
T  42205919 acaccggacacgacattgacatgccaacaccaataataatttgagaa 42205873  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 9878116 - 9878067
Alignment:
Q  313 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 362  Q
    |||||| ||| |||||||||| |||||||||||||||| |||||||||||    
T  9878116 acaccgaacaagacactgacacgtcgacaccaataataatttgagaatat 9878067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 9897966 - 9897917
Alignment:
Q  313 acaccggacacgacactgacatgtcgacaccaataatattttgagaatat 362  Q
    |||||||||||| |||| |||  ||||||||||||||| |||||||||||    
T  9897966 acaccggacacggcactcacacatcgacaccaataataatttgagaatat 9897917  T

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Target: scaffold0024 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 18192 - 18146
Alignment:
Q  313 acaccggacacgacactgacatgtcgacaccaataatattttgagaa 359  Q
    ||||| ||||||||||||||| ||||||||| |||| ||||||||||    
T  18192 acaccagacacgacactgacacgtcgacaccgataaaattttgagaa 18146  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 10341030 - 10341068
Alignment:
Q  312 aacaccggacacgacactgacatgtcgacaccaataata 350  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  10341030 aacaccggacatgacactgacatgtcgacaccagtaata 10341068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 623
Target Start/End: Complemental strand, 41006903 - 41006851
Alignment:
Q  571 ggaaggccaaaaatacgccatttaaacattccattgcggactatggcaccacc 623  Q
    ||||||||| || |||||||| ||||||| |||||| || |||||||||||||    
T  41006903 ggaaggccagaagtacgccatataaacatgccattgtggcctatggcaccacc 41006851  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 40158406 - 40158374
Alignment:
Q  395 acgtatttgatcagaagtgtctgtgctatagag 427  Q
    ||||||||||||||||||||| |||||||||||    
T  40158406 acgtatttgatcagaagtgtcggtgctatagag 40158374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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