View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_high_5 (Length: 446)
Name: NF21654_high_5
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 10 - 431
Target Start/End: Original strand, 3828999 - 3829420
Alignment:
| Q |
10 |
attatactgacatggcaaggaagcattttaaatggaggatatattagtttagatgcataaatttgaagcaaatacaaagattaattacatattatatttt |
109 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
3828999 |
attatattgacatggcaaggaagcattttaaatggaggatatattagtttagatgcataaatttgaagcaaatacaaagattagttacatattatatttt |
3829098 |
T |
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| Q |
110 |
acatcccatgatttagaaagnnnnnnnnnnngacttttgaaactctaggatttggagaagannnnnnnnagaatacgccatttatctatggtggcttgac |
209 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
3829099 |
acatcccatgatttagaaagaaaaaaaaa--gacttttgaaactctaggatttggagaagattttttttagaatacggcatttatctatggtggcttgac |
3829196 |
T |
|
| Q |
210 |
tactgacaaatccaaaaaatttactatatctaagctcaatatagtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatga- |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3829197 |
tactgacaaatccaaaaaatttactatatctaagctcaatatagtttatcataaatagttttacaaaaacatttaaattcataacaaataaaattatgac |
3829296 |
T |
|
| Q |
309 |
--cattatgaaaatttggagttacaataagtatactatttgtaatccaaaaattgtaaaagttaatatcaaaggactataattgctcttgtaacgacttc |
406 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
3829297 |
accattatgaaaatttggagttacaataagtatacta-ttgtaatccaaaaattgtaaaagttaatatcaaaggattataattgctcttgtaacgacttc |
3829395 |
T |
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| Q |
407 |
atattttaaaagtgtcgtaagattt |
431 |
Q |
| |
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| T |
3829396 |
atattttaaaagtgtcgtaagattt |
3829420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 42436506 - 42436449
Alignment:
| Q |
254 |
tttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
311 |
Q |
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||||||||||||| || || ||||| || |||||| |||||||||||||| ||||||| |
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| T |
42436506 |
tttatcataaatatttctagaaaaatatgtaaatttataacaaataaaatgatgacat |
42436449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 40191154 - 40191090
Alignment:
| Q |
19 |
acatggcaaggaagcattttaaatggaggatatattagtttagatgcataaatttgaagcaaata |
83 |
Q |
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|||||| |||||| |||||||||| || |||||||||||||||||||||||||| ||| ||||| |
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| T |
40191154 |
acatggtaaggaaacattttaaatagaatatatattagtttagatgcataaatttaaagaaaata |
40191090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 10266464 - 10266520
Alignment:
| Q |
253 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
311 |
Q |
| |
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|||||||||||||| ||||| |||||||||||||| ||||| ||||||| |||||||| |
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|
| T |
10266464 |
gtttatcataaatatttata--aaaacatttaaatttataaccaataaaaatatgacat |
10266520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 10285489 - 10285545
Alignment:
| Q |
253 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
311 |
Q |
| |
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|||||||||||||| ||||| |||| ||||||||||||||| ||||||| |||||||| |
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| T |
10285489 |
gtttatcataaatatttata--aaaatatttaaattcataaccaataaaaatatgacat |
10285545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 6015844 - 6015786
Alignment:
| Q |
253 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
311 |
Q |
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|||||||||||||| ||||||||||| || |||||| ||||| ||||||| ||||||| |
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| T |
6015844 |
gtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacat |
6015786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 253 - 311
Target Start/End: Complemental strand, 12252576 - 12252518
Alignment:
| Q |
253 |
gtttatcataaatagttatacaaaaacatttaaattcataacaaataaaattatgacat |
311 |
Q |
| |
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|||||||||||||| ||||||||||| || |||||| ||||| ||||||| ||||||| |
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| T |
12252576 |
gtttatcataaatatttatacaaaaatatataaatttataaccaataaaacgatgacat |
12252518 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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