View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_10 (Length: 293)
Name: NF21654_low_10
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_10 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 11 - 293
Target Start/End: Original strand, 1104084 - 1104366
Alignment:
| Q |
11 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaactttgtgaacaatacaaatgaag |
110 |
Q |
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| T |
1104084 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaacaaaatttgtgaacaatacaaatgaag |
1104183 |
T |
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| Q |
111 |
tttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaaga |
210 |
Q |
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| T |
1104184 |
tttactacacatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccagaaga |
1104283 |
T |
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| Q |
211 |
taatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattc |
293 |
Q |
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| T |
1104284 |
taatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaaatgtattc |
1104366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 11 - 285
Target Start/End: Original strand, 1047054 - 1047331
Alignment:
| Q |
11 |
cataggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttac-tcaaat--tgtcgaaacaaactttgtgaacaatacaaatg |
107 |
Q |
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| T |
1047054 |
cataggagtggtccttggaatggagttggatttagtggagcgcctatggagattgttacatcaactgttgttgttgcaagatctgtgaacaattcaaatg |
1047153 |
T |
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| Q |
108 |
aagtttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaacacttgagaagcgtcaacgcattacatggattccaga |
207 |
Q |
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| T |
1047154 |
aggtttattactcatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaacgcttagtcttcacgaacgcattatatggagtccaga |
1047253 |
T |
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| Q |
208 |
agataatgattggagggtttatgaggaagtaccaagagatgattgtgatgcctataatccttgtggaccttatggaaa |
285 |
Q |
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| T |
1047254 |
ggacaatacttggagtggtattgagtcagtaccaaaagatgattgtgatgtctataatcattgtggcccatatggaaa |
1047331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 23 - 172
Target Start/End: Original strand, 1087540 - 1087692
Alignment:
| Q |
23 |
ccttggaatggagttggatttagtggagcacccgcggtgactgttactcaaattgtcgaaa---caaactttgtgaacaatacaaatgaagtttactaca |
119 |
Q |
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| T |
1087540 |
ccttggaatggagttggatttagtggagcacctgtggagattgttacttcaattgttgtaattacaacgtcggtgaacaattcaaatgaagtttattaca |
1087639 |
T |
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| Q |
120 |
catatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaaca |
172 |
Q |
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| T |
1087640 |
tatatagtcttgtaaacaagagtaatgtttcaataacttatttgaaccaaaca |
1087692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 14 - 171
Target Start/End: Original strand, 1071870 - 1072030
Alignment:
| Q |
14 |
aggagtggtccttggaatggagttggatttagtggagcacccgcggtgactgttac-tcaaat--tgtcgaaacaaactttgtgaacaatacaaatgaag |
110 |
Q |
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| T |
1071870 |
aggagtggtccttggaatggagttggatttagtggagcacctatggagattattacgtcaagtgttatagctacaacacctgtgatcaattcaaatgaag |
1071969 |
T |
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| Q |
111 |
tttactacacatatagtcttgtaaacaagagtgtggtttcaataacttatttgaaccaaac |
171 |
Q |
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| T |
1071970 |
tttatttcacatatagtcttgtaaacaagagtatggtttcaataacttatttgaaccaaac |
1072030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 1087759 - 1087805
Alignment:
| Q |
239 |
ccaagagatgattgtgatgcctataatccttgtggaccttatggaaa |
285 |
Q |
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| T |
1087759 |
ccaaaagatgattgtgatgtctataatcgttgtggcccttatggaaa |
1087805 |
T |
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