View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_11 (Length: 269)
Name: NF21654_low_11
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1104393 - 1104648
Alignment:
| Q |
1 |
ttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtga |
100 |
Q |
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| T |
1104393 |
ttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgaaaaggcgaagaaacatggaattgtggtgtga |
1104492 |
T |
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| Q |
101 |
atgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttgggttgatggtaatatgacacttgagaattgtaagaacaaatgctt |
200 |
Q |
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| T |
1104493 |
atgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttgggttgatggtaatatgacacttgagaattgtaagaacaaatgctt |
1104592 |
T |
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| Q |
201 |
ggaaaattgttcttgcatggcttattcaaacttagatgttaggggagatggtagtg |
256 |
Q |
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| T |
1104593 |
ggaaaattgttcttgcatggcttattcaaacttagatgttaggggagatggtagtg |
1104648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1047366 - 1047604
Alignment:
| Q |
1 |
ttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtga |
100 |
Q |
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| T |
1047366 |
ttagatgggtttgagcctaaatcaccacaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtga |
1047465 |
T |
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| Q |
101 |
atgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttgggttgatggtaatatgacacttgagaattgtaagaacaaatgctt |
200 |
Q |
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| T |
1047466 |
atgatggttttggaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaaaaataaatgctt |
1047565 |
T |
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| Q |
201 |
ggaaaattgttcttgcatggcttattcaaacttagatgt |
239 |
Q |
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| T |
1047566 |
ggaaaattgttcttgcatggcttattcaaacttggatgt |
1047604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 1072179 - 1072417
Alignment:
| Q |
1 |
ttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtga |
100 |
Q |
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| T |
1072179 |
ttagatgggtttgagcctaaatcaccacaaaattggtacgcatcaaattggacacaaggatgtgtgcgcaaaggtgaagaaacatggaattgtggtgtga |
1072278 |
T |
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| Q |
101 |
atgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttgggttgatggtaatatgacacttgagaattgtaagaacaaatgctt |
200 |
Q |
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| T |
1072279 |
atgatcgttttagaacattttctggattgaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgctt |
1072378 |
T |
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| Q |
201 |
ggaaaattgttcttgcatggcttattcaaacttagatgt |
239 |
Q |
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| T |
1072379 |
ggaagattgttcttgtatggcttattcaaacttaaatgt |
1072417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 1087840 - 1088095
Alignment:
| Q |
1 |
ttagaagggtttgaacctaaatcgccacaaaattgggacacatttaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtga |
100 |
Q |
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| T |
1087840 |
ttagatgggtttgagcctaaatcgccaaaaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtgacgaagattggagatgtggagtga |
1087939 |
T |
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| Q |
101 |
atgatggttttggaacattttctagtttgaaattgccagaaacaacacatgcttgggttgatggtaatatgacacttgagaattgtaagaacaaatgctt |
200 |
Q |
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| T |
1087940 |
atgatagttttgtaagattttatggattgaaattgccagatacatcacatacttgggttgatgcaaatatgacacttgagaattgtaagaataaatgctt |
1088039 |
T |
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| Q |
201 |
ggaaaattgttcttgcatggcttattcaaacttagatgttaggggagatggtagtg |
256 |
Q |
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| T |
1088040 |
ggaagattgttcttgcatggcttattcaaacttggatgtggctggagatggtagtg |
1088095 |
T |
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