View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_12 (Length: 268)
Name: NF21654_low_12
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 258
Target Start/End: Original strand, 15240442 - 15240681
Alignment:
| Q |
19 |
ggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15240442 |
ggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaat |
15240541 |
T |
|
| Q |
119 |
tggggattatttggatacattatcatatacacattatggttcatttattatctactagtcttgattattggactacgtcaacacatgcatgagaaggagg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15240542 |
tggggattatttggatacattatcatatacacattatggttcatttattatctactagtcttgattattggactacgtcaacacatgcatgagaaggagg |
15240641 |
T |
|
| Q |
219 |
ttgccaccaccttaccaaatgcttcaatagtatagaatta |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
15240642 |
ttgccaccaccttaccaaatgcttcaatagtatagaatta |
15240681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 15246776 - 15246905
Alignment:
| Q |
19 |
ggttaaacttaaatttgatacaacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaat |
118 |
Q |
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||||||||||||||||| | | |||| |||||||||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||| | ||| |
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| T |
15246776 |
ggttaaacttaaatttg---ccagaaggcttgatacccttaaggaagtgtttggttcgctttcaataatttctttggtgttgatgttcttcccaaagaat |
15246872 |
T |
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| Q |
119 |
tggggattatttggatacattatcatatacaca |
151 |
Q |
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|||||||||| ||||||||||||||||| |||| |
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| T |
15246873 |
tggggattatctggatacattatcatatgcaca |
15246905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 39 - 183
Target Start/End: Complemental strand, 10693720 - 10693576
Alignment:
| Q |
39 |
caacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacat |
138 |
Q |
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|||| ||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||| ||| ||||||||| |
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| T |
10693720 |
caactagggttgataccttcatggaagtgtttggttccctttcaatagtttctttggtgatgatgttcttcccacacaattggggaatatgtggatacat |
10693621 |
T |
|
| Q |
139 |
tatcatatacacattatggttcatttattatctactagtcttgat |
183 |
Q |
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||||||||||||| |||||||||||||| || |||| ||| |||| |
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| T |
10693620 |
tatcatatacacaatatggttcatttatcatgtacttgtcatgat |
10693576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 37 - 164
Target Start/End: Complemental strand, 10698309 - 10698182
Alignment:
| Q |
37 |
tacaacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatac |
136 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||| ||| ||||||||||| |
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| T |
10698309 |
tacaacaagggttgataccctcatggaagtgtttggttccctttcaataatttctttggtgttgatgttctttccagaaaattgtggactatttggatac |
10698210 |
T |
|
| Q |
137 |
attatcatatacacattatggttcattt |
164 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
10698209 |
attacaatatacacattatggttcattt |
10698182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 48 - 164
Target Start/End: Complemental strand, 10657588 - 10657472
Alignment:
| Q |
48 |
ttgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatata |
147 |
Q |
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|
|||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||| |||| |||||||||||||||||||||| ||| || |
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| T |
10657588 |
ttgataccctcatggaagcgtttggttcactttcaataatttctttggtgttgatgttcatcccaaacaaatggggattatttggatacattaccattta |
10657489 |
T |
|
| Q |
148 |
cacattatggttcattt |
164 |
Q |
| |
|
||||||||||||||||| |
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| T |
10657488 |
cacattatggttcattt |
10657472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 39 - 164
Target Start/End: Complemental strand, 10707516 - 10707391
Alignment:
| Q |
39 |
caacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacat |
138 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| | ||||||| | | |||||||| | |
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| T |
10707516 |
caacaagggttgataccctcatggaagtgtttggttccctttcaatagtttctttggtgttgatgttctttccagaaaattgggaaacacttggatactt |
10707417 |
T |
|
| Q |
139 |
tatcatatacacattatggttcattt |
164 |
Q |
| |
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||||||||| ||| |||||||||||| |
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| T |
10707416 |
tatcatatatacaatatggttcattt |
10707391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 41 - 185
Target Start/End: Complemental strand, 10690372 - 10690228
Alignment:
| Q |
41 |
acaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacatta |
140 |
Q |
| |
|
|||||| |||||||| | |||||||||||||||| |||||| ||||||| ||||| |||||||| ||||| | |||||||||||||||||||| |||| |
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| T |
10690372 |
acaagggttgataccttgttggaagtgtttggttcactttcattaatttcattggtgttgatgttgctcccagaaaattggggattatttggatatatta |
10690273 |
T |
|
| Q |
141 |
tcatatacacattatggttcatttattatctactagtcttgatta |
185 |
Q |
| |
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||||||||||| |||||||||||| | || ||||| || |||||| |
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| T |
10690272 |
tcatatacacaatatggttcatttttcatgtactaatcatgatta |
10690228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 66 - 163
Target Start/End: Complemental strand, 10633980 - 10633883
Alignment:
| Q |
66 |
tgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggatacattatcatatacacattatggttcatt |
163 |
Q |
| |
|
|||||||||| || ||||||||||||||||| |||||||||| || | | ||||||| || ||||||||||| ||||||||||| |||||||||| |
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| T |
10633980 |
tgtttggttcgctctcaataatttctttggtgatgatgttctttcctaaaagttggggagtagttggatacattgtcatatacacaacatggttcatt |
10633883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 33777440 - 33777571
Alignment:
| Q |
38 |
acaacaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggttttgatgttcttcccacacaattggggattatttggataca |
137 |
Q |
| |
|
|||||||| |||||||| ||||| |||||||||||||| ||||||||| |||||||||| || |||||| | ||| ||||||||||| ||| | ||||| |
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|
| T |
33777440 |
acaacaagaattgatacactcatagaagtgtttggttcactttcaatagtttctttggtgttaatgttccttccaaacaattggggagtatgttcataca |
33777539 |
T |
|
| Q |
138 |
ttatcatatacacattatggttcatttattat |
169 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |
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| T |
33777540 |
ttatcatatacacagcatggttcatttgttat |
33777571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 33774804 - 33774936
Alignment:
| Q |
41 |
acaaggattgataccctcatggaagtgtttggttccctttcaataatttctttggtttt----gatgttcttcccacacaattggggattatttggatac |
136 |
Q |
| |
|
||||| |||||||| ||||||||||||||||| || ||||||||| |||||||||| || ||||||| ||||| |||||||| ||||| |||||| |
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| T |
33774804 |
acaagaattgatacactcatggaagtgtttggctcactttcaatagtttctttggtgttgatcgatgttcctcccaaacaattggacattatcaggatac |
33774903 |
T |
|
| Q |
137 |
attatcatatacacattatggttcatttattat |
169 |
Q |
| |
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|||||||||||||| |||||||||||| |||| |
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|
| T |
33774904 |
attatcatatacacgatatggttcatttgttat |
33774936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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