View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_15 (Length: 238)
Name: NF21654_low_15
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 53423562 - 53423768
Alignment:
| Q |
18 |
atttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatc |
117 |
Q |
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| T |
53423562 |
atttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatc |
53423661 |
T |
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| Q |
118 |
gggctacaaaagaaagaagtgtttgctatgtttagtgatgagtgtaaaatgatatctatttatgattctatctttattttgtgtatcctttaccttgaga |
217 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53423662 |
gggctacaaaagaaagaattgtttgctatgtttagtgatgagtgtaaaatgatatctatttatgattctatctttattttgtgtatcc-ttaccttgaga |
53423760 |
T |
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| Q |
218 |
atattctt |
225 |
Q |
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|||||||| |
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| T |
53423761 |
atattctt |
53423768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 53308312 - 53308434
Alignment:
| Q |
18 |
atttaaagttatatggtgatggctttttcccttttggaacatcagttacattattagcaatcgatgctgcaagaatggcaacacctggtgctgcaatatc |
117 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||| |
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| T |
53308312 |
atttaaagttatatggtgagggctttttcccttttggaacatcagttacatcattaccaatccatgatgcaagaatggcaacacctggtgctgcaatatc |
53308411 |
T |
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| Q |
118 |
gggctacaaaagaaagaagtgtt |
140 |
Q |
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| T |
53308412 |
aggctacaaaagaaagaattgtt |
53308434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 127
Target Start/End: Complemental strand, 48374487 - 48374435
Alignment:
| Q |
75 |
caatcgatgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa |
127 |
Q |
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| T |
48374487 |
caatccatgctgcaagaatggtaacacctggtgctgcaatatcaggctacaaa |
48374435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 81 - 140
Target Start/End: Original strand, 53431280 - 53431339
Alignment:
| Q |
81 |
atgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaaagaaagaagtgtt |
140 |
Q |
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| T |
53431280 |
atgctgcaagaatgttaacacctggtgctgcgatatcgggctaacaaaaaaagaattgtt |
53431339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Original strand, 26095761 - 26095806
Alignment:
| Q |
82 |
tgctgcaagaatggcaacacctggtgctgcaatatcgggctacaaa |
127 |
Q |
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| T |
26095761 |
tgctgcaacaatgttaacacctggtgctgcaatatcaggctacaaa |
26095806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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