View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21654_low_2 (Length: 697)

Name: NF21654_low_2
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21654_low_2
NF21654_low_2
[»] chr6 (1 HSPs)
chr6 (8-680)||(6551742-6552429)


Alignment Details
Target: chr6 (Bit Score: 489; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 8 - 680
Target Start/End: Original strand, 6551742 - 6552429
Alignment:
Q  8 gacatcatcattagtgtgtgtggtgctattccatcgatatatctatcatatagataaattactcctttggcataaagatcaatcacttatgtctgatttt 107  Q
    |||||||| ||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  6551742 gacatcataattagtgtgtgtggtgctattccatcgatatatc----atatagataaattactcctttggcataagaatcaatcacttatgtctgatttt 6551837  T
Q  108 gaggctattattcgtttagttttattatatgaagttgatgtttctcggtttgttgtggtggttgctagtggcatatccagaattttatagggatgaagaa 207  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6551838 gaggctattattcgtttagttttattatatgaagttgatgtttcacggtttgttgtggtggttgctagtggcatatccagaattttatagggatgaagaa 6551937  T
Q  208 a-gnnnnnnnttgaaaggttttttagaatttagtgtctgcaaatactccaaagctttggtcaattcatgaatgagatagttgaaaggttttttagaatat 306  Q
    |         |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6551938 ataaaaaaaattgaaaggttttttagaatttagtgtttgcaaatactccaaagctttggtcaattcatgaatgagatagttgaaaggttttttagaatat 6552037  T
Q  307 agtgtgtgtaactttctcctcatgcaaatgtttatttat------------ggaaattggacgaaaaaccttgttgagtctgttgaggaattttctaacg 394  Q
    |||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  6552038 agtgtgtgtaactttctcctcatgcaaatgtttatttatagaaagttttacggaaattggacgaaaaaccttgttgagtctgttgaggaattttccaacg 6552137  T
Q  395 tgatggtataaatatagattttggttttctataaataggtggaaaagacttgcttttaatattttaaactcttcaaaactcctcttctttcaagttttct 494  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6552138 tgatggtataaatatagattttggttttctataaataggtggaaaaaacttgcttttaatattttaaactcttcaaaactcctcttctttcaagttttct 6552237  T
Q  495 tgtgagactttccggtaatttcgtaa-----aattcttggtcgaaaattttatgatggttgattacttttcccttccaacccacgacgtctcgatttcat 589  Q
    |||||||||||||| ||||||||| |      ||| ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  6552238 tgtgagactttccgataatttcgtgagagtttattgttggtcgaaaattttatgatggttggttactttttccttccaacccacgacgtctcgatttcat 6552337  T
Q  590 actcatgtataggtatcattctttattccaaatactaca-nnnnnnnnctttctttatgctaccatttgttttatggattctccatgttctc 680  Q
    ||| ||||||||||||| |||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||    
T  6552338 acttatgtataggtatcgttctttattccaaatactacatttttttttctttctttatgctaccatttgttttatggattctccatgttctc 6552429  T

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