View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_4 (Length: 641)
Name: NF21654_low_4
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_4 |
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| [»] chr8 (6 HSPs) |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 305 - 641
Target Start/End: Original strand, 14223004 - 14223340
Alignment:
| Q |
305 |
gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggacgccgaaaacgtatttga |
404 |
Q |
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| T |
14223004 |
gaaatgcaacacctgacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcagacgccgaaaacgtatttga |
14223103 |
T |
|
| Q |
405 |
tcagaagtgtctgtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgta |
504 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14223104 |
tcagaagtgtcggtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgta |
14223203 |
T |
|
| Q |
505 |
gtttgattcttgaggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccat |
604 |
Q |
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|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14223204 |
gtttgattcttgaggtctaggttttcttagatcacaatttgattgcccaaaattgttgtcgatagcagaaggccaaaaatacgccatttaaacattccat |
14223303 |
T |
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| Q |
605 |
tgcggactatggcaccaccgccgtgggttactcttca |
641 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
14223304 |
tgcggactatggcaccaccgccgtggtttactcttca |
14223340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 61 - 243
Target Start/End: Original strand, 14222761 - 14222941
Alignment:
| Q |
61 |
tgaaactaaaaaacccaccaaaaccctttcttcattttctcccaaatgttcttccattcgcaccaggtatttttctctttctcttcatcttcattatcgc |
160 |
Q |
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| T |
14222761 |
tgaaactaaaaaacccaccaaaaccctttcttcattttctcccaaatgttcttccattcgctccaggtatttttctctttctcttcatcttcattatcgc |
14222860 |
T |
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| Q |
161 |
atttacttttatctgttgtttggttgatcaataagatgttttcggaatatgggatttcacaccttactatactgaaagcttcg |
243 |
Q |
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| T |
14222861 |
ttttacttttatctgttgtttggttgatcaataagatgttttcggaatatgggatttcacaccttac--tactgaaagcttcg |
14222941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 435 - 607
Target Start/End: Original strand, 14227340 - 14227512
Alignment:
| Q |
435 |
tattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag |
534 |
Q |
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|||||||||||||||||| ||||||||||||| ||||||| || |||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14227340 |
tattcattttgatgattgctggatgcctttcacttgacttacttctttattaagacaatgtgtctttgtagtttgattcttgaggtttaggttttcttag |
14227439 |
T |
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| Q |
535 |
atcacactttgattgcccaaaattgttgtcgatagcggaaggccaaaaatacgccatttaaacattccattgc |
607 |
Q |
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| T |
14227440 |
atcacactttgattgccgataagtgtttttgatggctgaaggccaaaaatccgtcatataaacatgccattgc |
14227512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 403 - 567
Target Start/End: Original strand, 14229623 - 14229784
Alignment:
| Q |
403 |
gatcagaagtgtctgtgctatagagatgatattattcattttgatgattgttggatgcctttcatttgactttctcctttatcaggacaatgtgtctttg |
502 |
Q |
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||||||||||||| ||||||||||||| |||| | ||||||||| ||||||| | |||||| ||||||||||||||||| ||||||||||||||||| |
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| T |
14229623 |
gatcagaagtgtcagtgctatagagataatataa---attttgatggttgttgggtatctttcacttgactttctcctttattaggacaatgtgtctttg |
14229719 |
T |
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| Q |
503 |
tagtttgattcttgaggtttaggttttcttagatcacactttgattgcccaaaattgttgtcgat |
567 |
Q |
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|||||||||||| ||||||||||||| || |||||| |||||||| ||| ||| |||| ||||| |
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| T |
14229720 |
tagtttgattctcgaggtttaggtttgttttgatcactctttgattccccgaaactgttctcgat |
14229784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 319 - 359
Target Start/End: Original strand, 11815810 - 11815850
Alignment:
| Q |
319 |
gacacgacactgacatgtcgacaccaataatattttgagaa |
359 |
Q |
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||||||||||||||| || ||||||||||||| |||||||| |
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| T |
11815810 |
gacacgacactgacacgttgacaccaataataatttgagaa |
11815850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 123 - 155
Target Start/End: Original strand, 14226736 - 14226768
Alignment:
| Q |
123 |
ccaggtatttttctctttctcttcatcttcatt |
155 |
Q |
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|||||||||||||||||||| |||||||||||| |
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| T |
14226736 |
ccaggtatttttctctttcttttcatcttcatt |
14226768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 305 - 387
Target Start/End: Complemental strand, 16151890 - 16151808
Alignment:
| Q |
305 |
gaaatgcaacaccggacacgacactgacatgtcgacaccaataatattttgagaatatttgtcgtgtatgtgtcatgtcggac |
387 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
16151890 |
gaaatgcaacaccggacacgacactgatatgtcgacaccaataatattttgagaatatgtgtcgtgtatgtgtcatgtcggac |
16151808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 305 - 348
Target Start/End: Complemental strand, 16152774 - 16152731
Alignment:
| Q |
305 |
gaaatgcaacaccggacacgacactgacatgtcgacaccaataa |
348 |
Q |
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| T |
16152774 |
gaaatgcaacatcggacacgacactgacatgtcgacaccaataa |
16152731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 16151997 - 16151954
Alignment:
| Q |
196 |
atgttttcggaatatgggatttcacaccttactatactgaaagctt |
241 |
Q |
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| T |
16151997 |
atgtttttggaatatgggatttcacaccttac--tactgaaagctt |
16151954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 570 - 615
Target Start/End: Complemental strand, 17355831 - 17355786
Alignment:
| Q |
570 |
cggaaggccaaaaatacgccatttaaacattccattgcggactatg |
615 |
Q |
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||||||||||||||| |||||| ||||||| ||||||||| ||||| |
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| T |
17355831 |
cggaaggccaaaaattcgccatataaacatgccattgcggcctatg |
17355786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 318 - 354
Target Start/End: Original strand, 18638544 - 18638580
Alignment:
| Q |
318 |
ggacacgacactgacatgtcgacaccaataatatttt |
354 |
Q |
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| T |
18638544 |
ggacacgacactgacatgtcgacaccaataatatttt |
18638580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 42205919 - 42205873
Alignment:
| Q |
313 |
acaccggacacgacactgacatgtcgacaccaataatattttgagaa |
359 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||||| |||||||| |
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| T |
42205919 |
acaccggacacgacattgacatgccaacaccaataataatttgagaa |
42205873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000009; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 9878116 - 9878067
Alignment:
| Q |
313 |
acaccggacacgacactgacatgtcgacaccaataatattttgagaatat |
362 |
Q |
| |
|
|||||| ||| |||||||||| |||||||||||||||| ||||||||||| |
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| T |
9878116 |
acaccgaacaagacactgacacgtcgacaccaataataatttgagaatat |
9878067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 9897966 - 9897917
Alignment:
| Q |
313 |
acaccggacacgacactgacatgtcgacaccaataatattttgagaatat |
362 |
Q |
| |
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|||||||||||| |||| ||| ||||||||||||||| ||||||||||| |
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| T |
9897966 |
acaccggacacggcactcacacatcgacaccaataataatttgagaatat |
9897917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 313 - 359
Target Start/End: Complemental strand, 18192 - 18146
Alignment:
| Q |
313 |
acaccggacacgacactgacatgtcgacaccaataatattttgagaa |
359 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| |||| |||||||||| |
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| T |
18192 |
acaccagacacgacactgacacgtcgacaccgataaaattttgagaa |
18146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 312 - 350
Target Start/End: Original strand, 10341030 - 10341068
Alignment:
| Q |
312 |
aacaccggacacgacactgacatgtcgacaccaataata |
350 |
Q |
| |
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| T |
10341030 |
aacaccggacatgacactgacatgtcgacaccagtaata |
10341068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 571 - 623
Target Start/End: Complemental strand, 41006903 - 41006851
Alignment:
| Q |
571 |
ggaaggccaaaaatacgccatttaaacattccattgcggactatggcaccacc |
623 |
Q |
| |
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||||||||| || |||||||| ||||||| |||||| || ||||||||||||| |
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| T |
41006903 |
ggaaggccagaagtacgccatataaacatgccattgtggcctatggcaccacc |
41006851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 395 - 427
Target Start/End: Complemental strand, 40158406 - 40158374
Alignment:
| Q |
395 |
acgtatttgatcagaagtgtctgtgctatagag |
427 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
40158406 |
acgtatttgatcagaagtgtcggtgctatagag |
40158374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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