View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_6 (Length: 392)
Name: NF21654_low_6
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 8 - 377
Target Start/End: Original strand, 42986105 - 42986474
Alignment:
| Q |
8 |
tcagagacatggcagccgcgacgagggaaatgccagcgacggagttgaaactagggagatgggagagaacatattgaacaaaagcaaacagcacaatgaa |
107 |
Q |
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| T |
42986105 |
tcagagacatggcagccgcgacgagggaaataccagcgacggagttgaaactagggagatgggagagaacatattgaacaaaagcaaacagcacaatgaa |
42986204 |
T |
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| Q |
108 |
ataagttgtcttaataggctcacaatcatcacaaagaatctcatgaagtttcttaagagattttgcaccaataaccatgtaaactatatcaatgccaacc |
207 |
Q |
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| T |
42986205 |
ataagttgtcttaataggctcacaatcatcacaaagaatctcatgaagtttcttaagagattttgcaccaataaccatgtaaactatatcaatgccaacc |
42986304 |
T |
|
| Q |
208 |
tccaccatgaattgttgaggcaccacaatccacaaaccaagtctttctccaaatgcatgctggcctaattcatgatacttgtcaaatctttttcctgata |
307 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
42986305 |
tccaccattaattgttgaggcaccacaatccacaaaccaagtctttctccaaatgcatgctggcttaattcatgatacttgtcaaatctttttcctgata |
42986404 |
T |
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| Q |
308 |
cggattcatgcatttcagtcatttgccatgcagtgtacaatgtacaaatccatgaaaggaccaaaatcgt |
377 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42986405 |
cggattcatgcatttcaatcatttgccatgcagtgtacaatgtacaaatccatgaaaggaccaaaatcgt |
42986474 |
T |
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