View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_7 (Length: 348)
Name: NF21654_low_7
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 61 - 331
Target Start/End: Complemental strand, 36879092 - 36878822
Alignment:
| Q |
61 |
gaactcagttttctagctaaacaagaatttaaatgatgaaacaagaccatgaccatgaccggttcttctgttgtgtagaatttatttttccaaacaatgg |
160 |
Q |
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| T |
36879092 |
gaactcagttttctagctaaacaagaatttaaatgatgaaacaagaccatgaccatgaccggttcttctgttgtgtagaatttatttttccaaacaatgg |
36878993 |
T |
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| Q |
161 |
tatcaccaagtgtcaatgagtcaagtcaactatacccccgatccattctcacaccacatgcataaatacccccaaaaaacacaaccttaagacagcacaa |
260 |
Q |
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| T |
36878992 |
tatcaccaagtgtcaatgagtcaagtcaactatacccccgatccattctcacaccacatgcataaatacccccaaaaaacacaaccttaagacagcacaa |
36878893 |
T |
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| Q |
261 |
ttagataattttcataaagtgtcatacatatggagaccatttttgtggttctagtgatctttgttattgct |
331 |
Q |
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| T |
36878892 |
ttagataattttcataaagtgtcatacatatggagaccatttttgtggttctagtgatctttgttattgct |
36878822 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 36879127 - 36879172
Alignment:
| Q |
1 |
ccaataaaaagggtgaatacacatttaaggaaaagtgaattgctaa |
46 |
Q |
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| T |
36879127 |
ccaataaaaagggtgaatacacatttaaggaaaagtgaattgctaa |
36879172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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