View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21654_low_9 (Length: 328)
Name: NF21654_low_9
Description: NF21654
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21654_low_9 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 51547535 - 51547218
Alignment:
| Q |
11 |
ccatcaacatcacttctattgccagtaatgacagtgagatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaacattttcct |
110 |
Q |
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| T |
51547535 |
ccatcaacatcacttctattgccagtaatgacagtttgatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaacattttcct |
51547436 |
T |
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| Q |
111 |
catatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttcccgttccatc |
210 |
Q |
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| T |
51547435 |
catatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttcccgttccatc |
51547336 |
T |
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| Q |
211 |
tgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggcgatctttgcttgataaccacgtgagagcatccattaaacgccggtttccatgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
51547335 |
tgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggtgatctttgcttgataaccacatgagagcatccattaaacgccggtttccatgt |
51547236 |
T |
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| Q |
311 |
cctttaggagctcttacc |
328 |
Q |
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||||||| |||||||||| |
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| T |
51547235 |
cctttagaagctcttacc |
51547218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 215
Target Start/End: Complemental strand, 19475427 - 19475223
Alignment:
| Q |
11 |
ccatcaacatcacttctattgccagtaatgacagtgagatcccttccatcaccaagtagaacaatattggttttattgcttgaaatttcaacattttcct |
110 |
Q |
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||||||||| ||||||| || ||||| |||||||| ||| |||||||||||||| | ||||| || ||||||| |||| |||||||||||||| | |
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| T |
19475427 |
ccatcaacaacacttctgttaccagtgatgacagtagaatcacttccatcaccaagcatcacaatgttagttttataacttggtatttcaacattttcat |
19475328 |
T |
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| Q |
111 |
catatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaaagtttcccgttccatc |
210 |
Q |
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|||| ||||||||| ||||| || | ||||||| | | || |||||||||||||| | || || |||||||| |||||||||||||| ||||||| |
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| T |
19475327 |
cataatacccttctttaacataaataactatcctaaccaaactattatttggagcaaagtttatagcatcattaatagtgctaaagtttccacttccatc |
19475228 |
T |
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| Q |
211 |
tgcag |
215 |
Q |
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||||| |
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| T |
19475227 |
tgcag |
19475223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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