View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21655_low_1 (Length: 700)
Name: NF21655_low_1
Description: NF21655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21655_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 187 - 684
Target Start/End: Original strand, 48080197 - 48080694
Alignment:
| Q |
187 |
ggtgttgagtgtggaaaaggaaagaaagtgtggtcaggatatgtagtgtatattgaaaaaatgttcttttaacctttcaggctttttgcgttcttagaaa |
286 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
48080197 |
ggtgttgagagtggaaaaggaaagaaagtgtggtcaggatatgtagtgtatattgaaaaaatgttcttttaaccttttaggctttttgcgttcttagaaa |
48080296 |
T |
|
| Q |
287 |
aacaaaggattttgtgaagactaacatattacaacccaaggaaatatattagtgatccatgattgattgcatgttttgtgataattgcttagtttatttt |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48080297 |
aacaaaggattttgtgaagactaacatattacaacccaaggaaatatattagtgatccatgattgattgcatgttttgtgataattgcttagtttatttt |
48080396 |
T |
|
| Q |
387 |
taaaattgatttgttgtgaatacaaggtacacgttgggtgcaacatttgtgaggattgtgattgtgaataatcaactattgattggaatgtttgacatca |
486 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
48080397 |
taaaattgatttgttgtgaatacaaggtacacgttgagtgcaacatttgtgaggattgtgattgtgaataatcaactattggttggaatgtttgacatca |
48080496 |
T |
|
| Q |
487 |
cactttggtttagcaaattgttttataagcattgctttgattcattgacatcatgatatttgtctttaaaaatacatttcatgaatcatacaaactcaaa |
586 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48080497 |
cactttggtttagcaaattgttttataagcattgctttgattcattgacatcatgatatttgtctttaaaaatacatttcatgaatcatacaaactcaaa |
48080596 |
T |
|
| Q |
587 |
attatgattgaaaatagaagttcttgaatgtttataaactttgagtgtttgagtgttcattgtacacaattgatgtttcaaccttgttttgaattttt |
684 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48080597 |
attatgattgaaaatagaagttcttgattgtttataaactttgagtgtttgagtgttcattgtacacaattgatgtttcaaccttgttttgaattttt |
48080694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 27906365 - 27906435
Alignment:
| Q |
432 |
tttgtgaggattgtgattgtgaataatcaactattgattggaatgtttgacatcacactttggtttagcaa |
502 |
Q |
| |
|
|||||||| ||||||||| |||||||| ||| ||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
27906365 |
tttgtgagcattgtgattatgaataattgacttttgattgaaatgtttgacatcacactttgatttagcaa |
27906435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University