View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21655_low_2 (Length: 352)
Name: NF21655_low_2
Description: NF21655
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21655_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 4999451 - 4999132
Alignment:
| Q |
19 |
catttccctcatgctgcaatgtcttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagcaatatattattactcttcacatccctatg |
118 |
Q |
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| T |
4999451 |
catttccctcatgctgcaatgtcttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagcaatatgttattactcttcacatccctatg |
4999352 |
T |
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| Q |
119 |
aacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatctcttagaccaatccaactccacaaacttc |
218 |
Q |
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| T |
4999351 |
aacaatagcaggaacacaatcatggtgtaaataagccaaccctttagcagcacctaaagcaattccaaatctcttagaccaatccaactccacaaacttc |
4999252 |
T |
|
| Q |
219 |
tcctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaactacaacaaaacaacagtttcactatat |
318 |
Q |
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| T |
4999251 |
ccctcatgcaaaacatcacctaaactcccattttccataaactcatacaccaatattctgaaatcatcacaactacaacaaaacaacagtttcactatat |
4999152 |
T |
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| Q |
319 |
tagcatgtctaattctaccc |
338 |
Q |
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| T |
4999151 |
tagcatgtctaattctaccc |
4999132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 26736056 - 26735977
Alignment:
| Q |
41 |
cttagcaagtccaaaatcagcaacacgaggaacaaaatcatgatcaagcaatatattattactcttcacatccctatgaa |
120 |
Q |
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| T |
26736056 |
cttagcaagtccaaaatcagcaacatgagcctcaaaatcagcatcaagcaatatattattagacttaacatccctatgaa |
26735977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 156
Target Start/End: Complemental strand, 21468560 - 21468521
Alignment:
| Q |
117 |
tgaacaatagcaggaacacaatcatggtgtaaataagcca |
156 |
Q |
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| T |
21468560 |
tgaacaataggaggagcacaatcatggtgtaaataagcca |
21468521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 38868357 - 38868291
Alignment:
| Q |
87 |
agcaatatattattactcttcacatccctatgaacaatagcaggaacacaatcatggtgtaaataag |
153 |
Q |
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| T |
38868357 |
agcaatatattactagattttacatccctatgaacaataggaacaacacaatcatggtgcaaataag |
38868291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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