View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_13 (Length: 521)
Name: NF21656_high_13
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 19 - 210
Target Start/End: Original strand, 6344063 - 6344254
Alignment:
| Q |
19 |
gaacttgttttcttatttggttgactatcgttggattctttggttgggtcacaacaaagttatttttcaagaaggggttgcaggttgcaatatgataatc |
118 |
Q |
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| T |
6344063 |
gaacttgttttcttatttggttgactatcgttggattctttggttgggtcacaacaaagttatttttcaagaaggggttgcaggttgcaatatgataatc |
6344162 |
T |
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| Q |
119 |
tctcgaattaatatggtgttttgatgatgatttgttggtcgagttggtaagaaatataatttggtgtattatgattggtttaattgtcttta |
210 |
Q |
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| T |
6344163 |
tctcgaattaatatggtgttttgatgatgatttgttggtcgagttggtaagaaatctaatttggtgtattatgattggtttaattgtcttta |
6344254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 308 - 503
Target Start/End: Original strand, 6345846 - 6346041
Alignment:
| Q |
308 |
ctcaaacatccatgtatatgtgatcacgctgaaacggccaaataaaaattgaatcacaagttcgttcattaatactatatcgcatatgtttgtgaattta |
407 |
Q |
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| T |
6345846 |
ctcaaacatccatgtatatgtgatcacgctgaaacgaccaaataaaaattgaatcacaagttctttcattaatactatatcgcatatgtttgtgaattta |
6345945 |
T |
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| Q |
408 |
tgcattttaaggttgttttaatgcactttttatacttatgtgagtcatacatactcaagtgttatttaaaggtctaacttcacttcatgtatgtct |
503 |
Q |
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| T |
6345946 |
tgcattttaaggatgttttaatgcactttttatacttatgtgagtcatacgtactcaagtgttatttaaaggtctaacttcacttcatgtatgtct |
6346041 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 202 - 280
Target Start/End: Original strand, 6345738 - 6345816
Alignment:
| Q |
202 |
ttgtctttaatatgtttatatggtgtgctattttgaacttcaagacaaattaatttatgtactttgagaccaaagataa |
280 |
Q |
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| T |
6345738 |
ttgtctttaatatgtttatatggtgtgctattttgaacttcaagacaaattaatttatttactttgagacgaaagataa |
6345816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 71 - 137
Target Start/End: Complemental strand, 1051319 - 1051253
Alignment:
| Q |
71 |
aacaaagttatttttcaagaaggggttgcaggttgcaatatgataatctctcgaattaatatggtgt |
137 |
Q |
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| T |
1051319 |
aacaatgttattttttaagaaggggttgtggattgcaattcgataatctctcaaattaaaatggtgt |
1051253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 351 - 418
Target Start/End: Original strand, 41191435 - 41191502
Alignment:
| Q |
351 |
aaaaattgaatcacaagttcgttcattaatactatatcgcatatgtttgtgaatttatgcattttaag |
418 |
Q |
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| T |
41191435 |
aaaaattgaatcacaaggtatttcattaatactctatcacatatgttagtgattttttgcgttttaag |
41191502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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