View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21656_high_14 (Length: 507)
Name: NF21656_high_14
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 330; Significance: 0; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 20 - 450
Target Start/End: Complemental strand, 23620033 - 23619604
Alignment:
| Q |
20 |
acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaat |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |
|
|
| T |
23620033 |
acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagtgaagaatcttaaaaaaatgattgccaaaaccaat |
23619934 |
T |
|
| Q |
120 |
catagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatattgtttgct |
219 |
Q |
| |
|
|||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
23619933 |
cataatggaatatatttgaagcacaatataaactcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatagtgtttgct |
23619834 |
T |
|
| Q |
220 |
cattctctctctttctttaatttcttgtactcccatgcctgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaac |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23619833 |
cattctct----ttctttaatttcttgtactcccatacctgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaac |
23619738 |
T |
|
| Q |
320 |
aaatgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttgacagttcc------cattaga |
413 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
23619737 |
aaatgcgtaattatatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttgacagttcccatttccattaga |
23619638 |
T |
|
| Q |
414 |
gcaatatgtcgtcatcatgatggagttggtagaaata |
450 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |
|
|
| T |
23619637 |
gcaatatgtcg---tcatgatggagttggtagaaata |
23619604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 20 - 399
Target Start/End: Complemental strand, 23607744 - 23607371
Alignment:
| Q |
20 |
acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaat |
119 |
Q |
| |
|
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||| ||||| |
|
|
| T |
23607744 |
acatattgaatgtgacattttgtccggaacaagtgatctatatacttttcaggaaagcggtcaagttaagaatcttaaaaaaatgattggtaaaaccaat |
23607645 |
T |
|
| Q |
120 |
catagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaat---caaacctaactcaagcattcctcccttatattgttt |
216 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |||||||||||||||||||| ||||||| | ||||| |
|
|
| T |
23607644 |
cataatcgaatatatttgaagcacaatataaactcctatggtgatgcagatgaatctcaataatcaaacctaactcaagcattcttcccttagaatgttt |
23607545 |
T |
|
| Q |
217 |
gctcattctctctctttctttaatttcttgtactcccatgcctgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaac |
316 |
Q |
| |
|
||||| |||| | |||||||||||||| || | ||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
23607544 |
tctcatgctcttt---------atttcttgtactcctatacttgttgaatgatgatatattgggattcgattggataatctgcatcctgaggtttagaac |
23607454 |
T |
|
| Q |
317 |
aacaaatgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga |
399 |
Q |
| |
|
|||| |||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23607453 |
aacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcaccaatgcaaaactatgaaatcaatttga |
23607371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 259 - 410
Target Start/End: Complemental strand, 23625605 - 23625456
Alignment:
| Q |
259 |
tgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattat |
358 |
Q |
| |
|
|||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
23625605 |
tgttgaatgaggatatattgggatcagatgagataatctgcatcctgaggtttagaacaaccgatgcgtcactgtgtctaagccttggaatgcagattat |
23625506 |
T |
|
| Q |
359 |
ctcttccttatcaccaatgcaaaactatgaaatcaatttgacagttcccatt |
410 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |||| |||| ||||| |
|
|
| T |
23625505 |
ctcttccttatcaccaatgcaaaac--tgaaatcaacttgatagtttccatt |
23625456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 46 - 208
Target Start/End: Complemental strand, 23578917 - 23578756
Alignment:
| Q |
46 |
gaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatatatttgaagcacaa |
145 |
Q |
| |
|
|||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||| || |||||| | |||||||||| |||||||||| |
|
|
| T |
23578917 |
gaacaagtgatctatatacttttctggaaagcggtcaagttaagaatcttgaaaaaatgattgc-aaccccaatctaaatcgaatatatatgaagcacaa |
23578819 |
T |
|
| Q |
146 |
tataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctccctta |
208 |
Q |
| |
|
|||||| |||||||||||| |||| || ||||||||||||| ||||||||||||| ||||||| |
|
|
| T |
23578818 |
tataaactcctatgatgatgcagacgactctcaatcaaacccaactcaagcattcttccctta |
23578756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 259 - 384
Target Start/End: Complemental strand, 23614829 - 23614704
Alignment:
| Q |
259 |
tgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattat |
358 |
Q |
| |
|
||||||| || |||| |||||||| |||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
23614829 |
tgttgaacgaggatagattgggatcagatgagataatctgcatcctgaggtttagaacaatcgatgcgtaactgtatctaagccttagaatgcagattat |
23614730 |
T |
|
| Q |
359 |
ctcttccttatcaccaatgcaaaact |
384 |
Q |
| |
|
||||||||||||||||||||| |||| |
|
|
| T |
23614729 |
ctcttccttatcaccaatgcagaact |
23614704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 261 - 368
Target Start/End: Complemental strand, 23584840 - 23584733
Alignment:
| Q |
261 |
ttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattatct |
360 |
Q |
| |
|
|||||||| ||||||||||| || |||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
23584840 |
ttgaatgaggatatattgggtttggatggggtaatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggagtgcagattatct |
23584741 |
T |
|
| Q |
361 |
cttcctta |
368 |
Q |
| |
|
|||||||| |
|
|
| T |
23584740 |
cttcctta |
23584733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 33 - 200
Target Start/End: Complemental strand, 23615107 - 23614944
Alignment:
| Q |
33 |
gacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatat |
132 |
Q |
| |
|
|||||||||| | ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||||| || |||||||| |
|
|
| T |
23615107 |
gacattttgtcaagaacaagtgatctttatacttttcaggaaagcggtcaagttaagaatccaaaaaaaatgattgg----tccaatcttaatcgaatat |
23615012 |
T |
|
| Q |
133 |
atttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattc |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||| |||| |
|
|
| T |
23615011 |
atttgaagcacaatataaactcctatgatgatgcagatgactctcaatcaaacctaactaaagtattc |
23614944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 200
Target Start/End: Complemental strand, 23625902 - 23625722
Alignment:
| Q |
21 |
catattgattgagacattttgttaggaacaagtgatctatata--cttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaa |
118 |
Q |
| |
|
|||||||| || |||| ||||| | ||||||||||| |||||| |||||||||||||| ||||||||||||||| | |||||| ||| ||||| |
|
|
| T |
23625902 |
catattgaatgtgacaatttgtcaagaacaagtgatttatatatacttttcaggaaagcggtcaagttaagaatcctaaaaaaatgattggcaa-tccaa |
23625804 |
T |
|
| Q |
119 |
tcatagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattc |
200 |
Q |
| |
|
|| || | ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||| |||| |
|
|
| T |
23625803 |
tcttaatggaatatatttgaagcacaatataaactcctatgatgatgcagatgactctcaatcaagcctaactcaagtattc |
23625722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 270 - 377
Target Start/End: Complemental strand, 23578587 - 23578480
Alignment:
| Q |
270 |
gatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattatctcttccttat |
369 |
Q |
| |
|
||||||||| | || ||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
23578587 |
gatatattgagtttggataggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaa |
23578488 |
T |
|
| Q |
370 |
caccaatg |
377 |
Q |
| |
|
|||||||| |
|
|
| T |
23578487 |
caccaatg |
23578480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 232
Target Start/End: Complemental strand, 23585149 - 23584976
Alignment:
| Q |
58 |
tatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatatatttgaagcacaatataaattccta |
157 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||| ||||||| | | |||||| || |||||||||| |||||||||||||||||||||| |
|
|
| T |
23585149 |
tatatacttttcaagaaagtggtcaagttaagaatctaaagaaaatgattgcaaca-ccaatcttaatcgaatatatatgaagcacaatataaattccta |
23585051 |
T |
|
| Q |
158 |
tgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatattgtttgctcattctctctctt |
232 |
Q |
| |
|
||||||| ||||||| ||||||||||||||||||| ||||||| || | |||| | ||| ||||| ||||||||| |
|
|
| T |
23585050 |
tgatgatgcagatgactctcaatcaaacctaactctagcattcttctcatatagtattttctcatgctctctctt |
23584976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 324 - 404
Target Start/End: Complemental strand, 23600140 - 23600060
Alignment:
| Q |
324 |
gcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttgacagtt |
404 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| || ||||||||||| ||| |||| |
|
|
| T |
23600140 |
gcgtaattgtttctaagccttggagtgcagattatcttttccttatcaccaatgcataataatgaaatcaatatgatagtt |
23600060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 23566194 - 23566130
Alignment:
| Q |
335 |
tctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga |
399 |
Q |
| |
|
||||||||||||| |||||||||||| |||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
23566194 |
tctaagccttggagtgcagattatcttttccttatcacctatgcagaataatgaaatcaatttga |
23566130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 135 - 205
Target Start/End: Complemental strand, 23606293 - 23606225
Alignment:
| Q |
135 |
ttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctccc |
205 |
Q |
| |
|
||||||||||||||||| |||||||||||| | ||||| |||||||||||||||||| ||||||| |||| |
|
|
| T |
23606293 |
ttgaagcacaatataaactcctatgatgatgctgatga--ctcaatcaaacctaactccagcattcttccc |
23606225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 23572976 - 23572943
Alignment:
| Q |
285 |
gatgggataatctgcatcctgaggtttagaacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
23572976 |
gatgggataatctgcatcctgaggtttagaacaa |
23572943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 23607516 - 23607475
Alignment:
| Q |
448 |
atacttgttgaatgaggatatattgggattcgatgggataat |
489 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
23607516 |
atacttgttgaatgatgatatattgggattcgattggataat |
23607475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 23572910 - 23572834
Alignment:
| Q |
323 |
tgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga |
399 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||||| | ||||||| || ||||||| || || |||||||||||| |
|
|
| T |
23572910 |
tgcgtaattgtttctaagccttggattgtagattattttttccttaacatcaatgcagaataattaaatcaatttga |
23572834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 285 - 318
Target Start/End: Complemental strand, 23566271 - 23566238
Alignment:
| Q |
285 |
gatgggataatctgcatcctgaggtttagaacaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| |
|
|
| T |
23566271 |
gatgggataatctgcatcctgaggtttaaaacaa |
23566238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 448 - 489
Target Start/End: Complemental strand, 23619803 - 23619762
Alignment:
| Q |
448 |
atacttgttgaatgaggatatattgggattcgatgggataat |
489 |
Q |
| |
|
|||| |||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
23619803 |
atacctgttgaatgatgatatattgggatttgatgggataat |
23619762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 399
Target Start/End: Complemental strand, 23590001 - 23589926
Alignment:
| Q |
323 |
tgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga |
399 |
Q |
| |
|
|||||||| || ||||||||| ||| ||| |||||||| ||||| |||||||||||| || |||||||||| |||| |
|
|
| T |
23590001 |
tgcgtaatcgtttctaagcctcggagtgcggattatcttttcct-atcaccaatgcagaataatgaaatcaaattga |
23589926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University