View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_16 (Length: 480)
Name: NF21656_high_16
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 15 - 470
Target Start/End: Original strand, 4132477 - 4132932
Alignment:
| Q |
15 |
aaaaaccacctcggacccccactgatcaaattctgccatcatatgaaatactccctcactctatatatgcaatccacgccgatttcaattattctccagg |
114 |
Q |
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| T |
4132477 |
aaaaaccacctcggacccccactgatcaaattctgccatgatatgaaatactccctcactctatatatgcaatccacgccgatttcaattattctccagg |
4132576 |
T |
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| Q |
115 |
actccacaacagttaaaactgctagtattgaaaactcagctaccttgcaaataaaatacgcccacacactagaaatctgtagttatgcagagaaattgag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132577 |
actccacaacagttaaaactgctagtattgaaaactcagctaccttgcaaataaaatacgcccacacactagaaatctgtagttatgcagagaaattgag |
4132676 |
T |
|
| Q |
215 |
cagagaaaacagaacgaactacaatcacaaaatgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaag |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132677 |
cagagaaaacagaacgaactacaatcgcaaaatgaaaagctagctacttccaattctcacgaatcacattcattgaagtttgagaactattggctcaaag |
4132776 |
T |
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| Q |
315 |
tcacaccctccataaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacgtgctgcgccaga |
414 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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| T |
4132777 |
tcacaccctccataaagagaaataatccaatagtcagagcacaaatattcccaatcgtttctgcactctgctgagaaagacatcaacatgctgcgccaaa |
4132876 |
T |
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| Q |
415 |
atacaagaccgcaaaatagcatagttatacacaccaaaactttatagcgacctttg |
470 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4132877 |
atacaagaccgcaaaatagcatagttatacacaccaaaactttatagcgacctttg |
4132932 |
T |
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