View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_28 (Length: 374)
Name: NF21656_high_28
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_28 |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 359
Target Start/End: Original strand, 35071688 - 35072043
Alignment:
| Q |
19 |
ttatctaacccgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaaaaacaaatagccaaaatggaac |
118 |
Q |
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| T |
35071688 |
ttatctaactcgtattaatgcttatgatacacacacgtttcttatttgtaacagcatttcctaatcactaacatacaaaaacaaatagccaaaatggaac |
35071787 |
T |
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| Q |
119 |
atttttggattcaaatttcaa---------------cttttcataattactctcactgtgaactctgattggtcaaacgatcagggttggtaacctcttc |
203 |
Q |
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| T |
35071788 |
atttttggattcaaatttcaatccacacgaacagaactgttcattattactctcactgtgaactctgattggtcaaacgatcagggttggtaacctcttc |
35071887 |
T |
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| Q |
204 |
cttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagtaaagctcctcatgaatttacca |
303 |
Q |
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| T |
35071888 |
cttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaatttacagttagctggaagagtaaaactcctcatgaatttacca |
35071987 |
T |
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| Q |
304 |
ctactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcct |
359 |
Q |
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| T |
35071988 |
ctactacgctcaacacgctgacatccatcatttgtatcttgtctctccatgctcct |
35072043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 34919235 - 34919170
Alignment:
| Q |
199 |
tcttccttagggacagtaacagtaagaacaccatcttcaatagaagccttaacctgatccaattta |
264 |
Q |
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| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccatttta |
34919170 |
T |
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