View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21656_high_29 (Length: 370)
Name: NF21656_high_29
Description: NF21656
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21656_high_29 |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 1220095 - 1219731
Alignment:
| Q |
1 |
acatcgaaaataatgttgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggcgatca |
100 |
Q |
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| T |
1220095 |
acatcgaaaataatgttgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggtgatca |
1219996 |
T |
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| Q |
101 |
acaagttgtgcctggcatggaaaaagatggaacaattagtgaagattcaattggagttccacgtgagactttaactaaagtgccacgcaagacattaacc |
200 |
Q |
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| T |
1219995 |
acaagttgtgcctggcatggaaaaagatggaacaattagtgaagattcaattggagttccacgtgagactttaactaaagtgccacgcaagacattaacc |
1219896 |
T |
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| Q |
201 |
aatttgcatgtggatcatctt--------------tactctacctagtagctctaatagccatgccactggagttcattcattgtcgggaggagttaata |
286 |
Q |
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| T |
1219895 |
aatttgcatgtggatcatcttttgcaaaggtcctctactctacctagtagctctaatagccatgccactggagttcattcattgtcgggaggagttaata |
1219796 |
T |
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| Q |
287 |
aagtttcatccttggaagcaaaagcacatcagcaagaaactgccttcaaaattatatgttgcaac |
351 |
Q |
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| T |
1219795 |
aagtttcatccttggaagcaaaagcacatcagcaagaaactgccttaagaattatatgttgcaac |
1219731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 225 - 346
Target Start/End: Original strand, 2004739 - 2004860
Alignment:
| Q |
225 |
tctacctagtagctctaatagccatgccactggagttcattcattgtcgggaggagttaataaagtttcatccttggaagcaaaagcacatcagcaagaa |
324 |
Q |
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| T |
2004739 |
tctacctagtagctctaacagctatgccactggagttcattcattgtcagcagaagttaatagagtctcatccctggaaccaaaagcgcatcagcaagaa |
2004838 |
T |
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| Q |
325 |
actgccttcaaaattatatgtt |
346 |
Q |
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| T |
2004839 |
atcaccttcaaaattatttgtt |
2004860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 33362254 - 33362347
Alignment:
| Q |
17 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggcgatcaacaagttgtg |
110 |
Q |
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| T |
33362254 |
tgatttaatgataattggtgaaataaatcgtaaacgtcataaggggaaggcacttgaaaccattcatgagggttacggtgatcaacaagttgtg |
33362347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 2004641 - 2004713
Alignment:
| Q |
150 |
attggagttccacgtgagactttaactaaagtgccacgcaagacattaaccaatttgcatgtggatcatcttt |
222 |
Q |
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| T |
2004641 |
attggagctccacgtgagactttaactgcagtgccatgcgagacattaacggatttgcatgtggatcatcttt |
2004713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 41441088 - 41441181
Alignment:
| Q |
17 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagggttacggcgatcaacaagttgtg |
110 |
Q |
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| T |
41441088 |
tgatttaatggtacttggagaaataagtcgtaaacgtagcaaggggaaggctcttgaagccattcgtgagggttattgtgatcaacaagttgtg |
41441181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Original strand, 41431025 - 41431095
Alignment:
| Q |
17 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagg |
87 |
Q |
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| T |
41431025 |
tgatttaatggtaattggtgaaataagtcgtaaacgtaaaaaggggaagacacttgaagccattcatgagg |
41431095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0274 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 13898 - 13828
Alignment:
| Q |
17 |
tgatttaatggtacttggtgaaataagtcgtaatcatggcaagggagaggcacttgaaaccattcatgagg |
87 |
Q |
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| T |
13898 |
tgatttaatggtaattggtgaaataagtcgtaaacgtaaaaaggggaagacacttgaagccattcatgagg |
13828 |
T |
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